Query= MSMg01no396_m20.b1 MSMg01no396_m20.b1 CHROMAT_FILE:
MSMg01no396_m20.b1 PHD_FILE: MSMg01no396_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
(243 letters)
>mm_chr3_118359109_118359750
Length = 642
Score = 408 bits (211), Expect = e-118
Identities = 235/243 (96%), Gaps = 1/243 (0%)
Strand = Plus / Plus
Query: 1 gaacatacaatgtttcatagaatataacctttcttaccaggcttattaaattacgaaaga 60
|||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||||
Sbjct: 201 gaacatacaatgtttcatagaatataacctttcttagcagacaaattaaattaccaaaga 260
Query: 61 aaaagaagataaagttgtagggagccaaagtgtaattttaaaattaggctgctcttagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagaagataaagttgtagggagccaaagtgtaattttaaaattaggctgctcttagct 320
Query: 121 ccgcaaatgcacaaggaggcctggcctatgtagagggcatatactttatttctgtgtcac 180
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccaaatgca-aaggaggcctggcctatgtagagggcatatactttatttctgtgtcac 379
Query: 181 atgtttgatagcattttgacaggtgacatatatgttgagttaataaaagggcgagtcagc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 380 atgtttgatagcattttgacaggtgacatatatgttgagttaataaaagggcaagtcagc 439
Query: 241 caa 243
|||
Sbjct: 440 caa 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space: 148122
Effective search space used: 148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no396_m20.g1 MSMg01no396_m20.g1 CHROMAT_FILE:
MSMg01no396_m20.g1 PHD_FILE: MSMg01no396_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:01 2005
(532 letters)
>mm_chr3_118546714_118547645
Length = 932
Score = 988 bits (511), Expect = 0.0
Identities = 526/531 (99%)
Strand = Plus / Minus
Query: 2 ctttaccacagaggacgtccccactctatcaatgtcatggaatgtataatctgtcttttt 61
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 732 ctttaccacagaggacgtccccactctatcaatgtcatggaatgcataatctgtcttttt 673
Query: 62 catgctgattggatgctccctttgttatatgtactgacatagtttaagtgtttgtgtcta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 catgctgattggatgctccctttgttatatgtactgacatagtttaagtgtttgtgtcta 613
Query: 122 tttctgattttcctaatctgtccctttgatctgtcttcatgctctgataccatatcattt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttctgattttcctaatctgtccctttgatctgtcttcatgctctgataccatatcattt 553
Query: 182 taattggtgaggctaactgacatgttaggctcattcccattataatttcacttctaatct 241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 taattggtgaggcttactgacatgttaggctcattcccattataatttcacttctaatct 493
Query: 242 tcccttgtgttacattgtctactggcttattatttgcatatagaaatgctactgacctct 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcccttgtgttacattgtctactggcttattatttgcatatagaaatgctactgacctct 433
Query: 302 gaacactgagtggaaccctaagcctcctgagcacatttcctgcatctggaatattatgag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gaacactgagtggaaccctaagcctcctgagcacatttcctgcatctggaatattatgag 373
Query: 362 ttgattgtctttgattgttattcttcaaatatataaatattttctcacacaatcgaatct 421
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 372 ttgattgtctttgattgttattcttcaaatatataagtattttctcacacaatcgaatct 313
Query: 422 tttctcttgagttactttatttctcctgaatggcttagtacatgtaagttttctttaaaa 481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 312 tttctcttgagttactttatttctcctgaatagcttagtacatgtaagttttctttaaaa 253
Query: 482 tatagtaataacagacacatttatcctaattctgaattactgtgaataagg 532
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 252 tatagtaataacagacacatttatcctaattctgtattactgtgaataagg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
