BAC Information

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BAC

Clone NameMSMg01-396O12
Chromosome3 (Build37)
Map Location 118,268,105 - 118,268,530
singlet/doubletsinglet
Overlap geneDpyd
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneLOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396O12.T7 (MSMg01no396_o12.b1)MSMg01-396O12.TJ (MSMg01no396_o12.g1)
ACCAG497370AG497371
length7711,143
length of high quality
(start - end)
461 (59 - 519)---
definitionCHROMAT_FILE: MSMg01no396_o12.b1 PHD_FILE: MSMg01no396_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:09 2005CHROMAT_FILE: MSMg01no396_o12.g1 PHD_FILE: MSMg01no396_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAANTCAGGCTCT
TTCGAGAAAGCTCCGAAGTAGNTGAGTATTGGCCATGGTCACTTTCTCTG
ACCTCAGCAGTGGTTTAATAGGATATCTTCATTTAGACTGAATCACCAGC
CACTATGATGTCAATATTGCCTCATCTAAAGGCAAGGGGATAAGATTATT
CAGTTCAAGACTTCACTTTTGTTCAATATTTTGATTCCCACCCCCCATCA
AAGGTAATTGAGGAGAGACCATAAAAGTATGTAGTTACAGTTTTAACTAT
TTGTACTTTTGNTTTTTGATATTTTAAGCCAAATTAATTTGCTTCTTCCT
CCTTTCTGGCCTCCTCCAGCGTAGCTGAAGTCTTTCCCTTGAATTATTGA
GCGACCACTCAGCTATATCCTGAACAAAGGAAAAGAATTCCAATCTACTG
TATGCAAAATAGAGTGTATTTTGAGTCAAATCAAAATGGCTTTTGAATTA
CTGCTCCTATACCTTCAGCTGAGCAGAGAAGACAATAAAGAACTTCCTGT
GTTTACTAATTAAGAACATCAGTTTTTAAAATGGGGTCATCGGAAAGAAA
AACAGGAAATGATTTTGGAGAAAGCGATTTTGAAAAGACCTGCTTCTTTT
ATAGAAAAAATTGCGTTTCAAATTTGGCAGAGATAGCAAAGTTGCTTTCT
CGGACAATCCTTTAATTATAAATGCTTCCCGCTCCTGGGGAGGGGAAAAA
AAGTCGAACTTGAACTTAATG
TTCCCCCCGTGTTTCTCGCCTCGGTTTTCCCAATAACAGAGACGGGAGAA
TAAGAAACAGTTTTCCCCCAACACAAACCATAGGAAACAACGCCCCAATC
ATGTAATGCGCCCCGCGGGGCTTTATCCGAGGATGTTTATCACTCACCAA
CTCGTGGAACGCTACACGAGGCAGTAAATCACGGGATACCCAAGAATGAT
GAACGAGAGAACCCTGCGAAGAAAAATAAAACCCCTCTAACCCAATTGAC
CAAATATATTCTATAAGGCGATATGATACATATGCGAATGGACACCTCCG
CTAGCCGTACTGCGCGTACCGAGCTGGGTCATCTGTTTTTCCCGTCGCAA
AAACAGCGCCCAGAAGAACTGACCCGCCAANAGACGTCGACGATAGGATG
GAGATGAATAGTAGCAAACGCATAACTACCGATAGAGAAGTAGTGTATGT
TTTTTGCGAGGTGGCGGAATAGGGAGGACGACACGAAATCGAAAAGATAT
GGTGATGTGGCCGGAAAACGACGTGCGGTGCAAGCTGGACTATCGCCTAT
ACTAAGGCGCTCGGATCATTCGAGATCTGATCGTGACGGTACCGTGGTTC
GTCGCCCCACACGCCTATCCACCCCGCCGACCGAACGGCGATCTTGGTGT
CAGCTATCCGGGCTAGGCAGGTGCGCACGGCGAAAGTGAAGCTGCGGGCG
GGGAATCGAGAAGCAACGACATTCGCCGCTCTCGCGATCGCGCCAAAGTG
GTAATGCACACGCGTAGCGAGAAACGCGAAGGGCGCGGGCCGCTAGTGCG
ATGCCGTGACCCATGCGTGCGACCGCGATCCGTGAGGGCCAGAGCGGGCC
ATAAAACGCCGAGATAATCTGAGAGAGGGGATGTATCGAGATCGGTGATG
GCGGAGCTGCCGATGACTGTTATACAGATAAACCGTGTTTGGCTGAATGA
ACAAGCAGATTGAAGCAACGTGGATGGTGGACCGGGACGATAATACCGGG
TCTATCCTTCCCACCGCGTTGTTTACGCGAGCTGAGCGCGCCCGGACCCC
CGTGAGTATCGGATCAGACACGATAGATAATGGCCTTGCGCCGCCGTTTA
CACCCGCCGCCCCCGCTGCGTTCTTCGTCTTGTTAGTGCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_o12.b1 MSMg01no396_o12.b1 CHROMAT_FILE:
MSMg01no396_o12.b1 PHD_FILE: MSMg01no396_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:09 2005
         (461 letters)



>mm_chr3_118267905_118268764
          Length = 860

 Score =  696 bits (360), Expect = 0.0
 Identities = 411/431 (95%), Gaps = 9/431 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctccgaagtagntgagtattggccatggtcactttctctgacctcagcagtggtttaa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agctccgaagtagttgagtattggccatggtcactttctctgacctcagcagtggtttaa 260

                                                                       
Query: 61  taggatatcttcatttagactgaatcaccagccactatgatgtcaatattgcctcatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggatatcttcatttagactgaatcaccagccactatgatgtcaatattgcctcatcta 320

                                                                       
Query: 121 aaggcaagggg--ataagattattcagttcaagacttcacttttgttcaatattttgatt 178
           |||||||||||  ||  ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaggcaagggggaat--gattattcagttcaagacttcacttttgttcaa-attttgatt 377

                                                                       
Query: 179 cccaccccccatcaaaggtaattgaggagagaccataaaagtatgtagttacagttttaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cccaccccccatcaaaggtaattgaggagagaccataaaagtatgtagttacagttttaa 437

                                                                       
Query: 239 ctatttgtacttttgntt--tttgatattttaagccaaattaatttgcttcttcctcctt 296
           ||||||||||  | |  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctatttgtacactgg--tcatttgatattttaagccaaattaatttgcttcttcctcctt 495

                                                                       
Query: 297 tctggcctcctccagcgtagctgaagtctttcccttgaattattgagcgaccactcagct 356
           ||||||||||||||||||||||||||||||||||||||||||||||| ||  | ||||||
Sbjct: 496 tctggcctcctccagcgtagctgaagtctttcccttgaattattgagtgagtattcagct 555

                                                                       
Query: 357 atatcctgaacaaaggaaaagaattccaatctactgtatgcaaaatagagtgtattttga 416
           ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||
Sbjct: 556 atatcctgaacaaaggaaaagtattccaatctactgtatgcaaaatagagtacattttga 615

                      
Query: 417 gtcaaatcaaa 427
           |||||||||||
Sbjct: 616 gtcaaatcaaa 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 860
Length adjustment: 10
Effective length of query: 451
Effective length of database: 850
Effective search space:   383350
Effective search space used:   383350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)