Query= MSMg01no397_a13.b1 MSMg01no397_a13.b1 CHROMAT_FILE:
MSMg01no397_a13.b1 PHD_FILE: MSMg01no397_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:19 2005
(560 letters)
>mm_chr3_76452606_76453565
Length = 960
Score = 957 bits (495), Expect = 0.0
Identities = 545/567 (96%), Gaps = 14/567 (2%)
Strand = Plus / Minus
Query: 1 gaattatttatttatcttagtgtttctaagctttgttgttcttttagataagaaacaag- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattatttatttatcttagtgtttctaagctttgttgttcttttagataagaaacaagg 584
Query: 60 -----gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatttctgaaaaatattggctt 114
||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 583 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaattctgaaaaatattggctt 524
Query: 115 taacatttatctatacacagatgatataaggggcagttgggcattactatctctaagtca 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taacatttatctatacacagatgatataaggggcagttgggcattactatctctaagtca 464
Query: 175 ctttgagagtaaataggttatagatcatgtgtctctccctatattatgatgtgctctgaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ctttgagagtaaataggttatagatcatgtgtctctccctatattatgatgtgctctgaa 404
Query: 235 tgtcatacattcttgtttttattttacttttaatgtaactctaaagtggatatagttatt 294
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgtcatacattcatgaacttattttacttttaatgtaactctaaagtggatatagttatt 344
Query: 295 actcccatttcagagtactatgtatcttataatgctagactaagcttgctttctctctct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 actcccatttcagagtactatgtatcttataatgctagactaagcttgctttctctctct 284
Query: 355 ctctctctttctctctctctctctctctctctctccctctccctctctctctctctctct 414
||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 283 ctctctc--tctctctttctctctctctctctct--ctctcc--ctctctctctctctct 230
Query: 415 ctttctttctttctttttctctttctttccttctttctttcttctctactaaggtcaatg 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 229 ctttctttctttctttttctctttctttccttctttctttcttctctactaaggccaatg 170
Query: 475 atcttaactgtccaggtccaaattctggatacagatagaaagatacaataccttctgtat 534
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 atcttaactgtccaggcccaaattctggatacagatagaaagatacaataccttctgtat 110
Query: 535 gctna-tttatgtttgaattttggcaa 560
||| | |||||||||||||||||||||
Sbjct: 109 gct-attttatgtttgaattttggcaa 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_a13.g1 MSMg01no397_a13.g1 CHROMAT_FILE:
MSMg01no397_a13.g1 PHD_FILE: MSMg01no397_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:19 2005
(432 letters)
>mm_chr3_76286774_76287605
Length = 832
Score = 828 bits (428), Expect = 0.0
Identities = 431/432 (99%)
Strand = Plus / Plus
Query: 1 attcccagcctgtaatgacactaaggacaagtgtgatggagggtatatatatatttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcccagcctgtaatgacactaaggacaagtgtgatggagggtatatatatatttctgt 260
Query: 61 acctttggtatttctaacatattaattattttttccctttcccaatatattaattcttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctttggtatttctaacatattaattattttttccctttcccaatatattaattcttaa 320
Query: 121 gaaagaaaggctttaaatgatagtgtgtcgtgtacttgtcaatacatctcagatacttag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gaaagaaaggctttaaatgatagtgtgtcgtgcacttgtcaatacatctcagatacttag 380
Query: 181 ggtatgcattctacaaagaaagtgtgtttgtatgtttctgatgaaatgaacttgcaatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtatgcattctacaaagaaagtgtgtttgtatgtttctgatgaaatgaacttgcaatag 440
Query: 241 gggatgattgtatggaaatgagatgcagccttatttcaaattattgatctttatcctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggatgattgtatggaaatgagatgcagccttatttcaaattattgatctttatcctttt 500
Query: 301 tgaatgtttattttattttatttatttttgcttttgataatttcatacgtattaaggcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaatgtttattttattttatttatttttgcttttgataatttcatacgtattaaggcat 560
Query: 361 cttaatcttatgcacccctcaattcttctctacaaacactagcaacccccacaactgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttaatcttatgcacccctcaattcttctctacaaacactagcaacccccacaactgcta 620
Query: 421 ttcagcttcatg 432
||||||||||||
Sbjct: 621 ttcagcttcatg 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
