BAC Information

Click to search

BAC

Clone NameMSMg01-397A24
Chromosome3 (Build37)
Map Location 56,554,478 - 56,554,808
singlet/doubletsinglet
Overlap genenone
Upstream geneMab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397A24.T7 (MSMg01no397_a24.b1)MSMg01-397A24.TJ (MSMg01no397_a24.g1)
ACCAG497490AG497491
length1,186792
length of high quality
(start - end)		---331 (68 - 398)
definitionCHROMAT_FILE: MSMg01no397_a24.b1 PHD_FILE: MSMg01no397_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:21 2005CHROMAT_FILE: MSMg01no397_a24.g1 PHD_FILE: MSMg01no397_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCAGAAGAAGNNNNNNNTTCNNNTCTTTCTTAAATCCCTCGCCCAACAAA
GAAAGAGAGAGAAANCNGGGAGTCACCTCTTTTTTTGTTGAGTCTCACAA
AAAAGAGGGAGAGGGAGCCGTTCACCCCCCCCCTCTTTTTGCTATCTGCA
TTTTTCCCCTCCCCCCCTCCNNCCCCTCACTCTACCTTCCTATTTATCCG
TTCTCTTCCGCCCCCTCCCATATTTATTTTCTCCCCCCCCCCCCNCCCAC
TCTTCTCTTCCTCCCCTTATTCCCATTCCATTTTTCATTTTCTCTCTCTT
CTCCTCTCTCCCCTGTCGCTTATTCACTTGGTCTTTCTCCCCCCCTCTAA
AATACCCGTTTTTTTCTTTTCACCCCCCCCTACCCCAGCTATACCATCTA
CTATCACCACTTACTGTCTATTTCCCTAATTTATACACCCCCCCAGTTCT
AATTCGCGAAGCCTAAAATAAGTAACAAGCCCCATTCACAGAACTACCAC
CTCCAATTATACTCTTCTCAACTATGTCAATACACCACCCGATTATACAT
ACCCATCACCATTCATCCCAACCTGATACTTACCCCACCTAACCCACGCG
GAACCCGTACACTCTATAATATAATATAACTCACGAACGGGCACTACCAC
AACACCCAATTATTCATACTTCCCGAATACCCATTATTACACACCCGTTC
GTATGACCCATTAGACAAACAATTTCAACAAAACACCACACCATACAACT
ACGTCATAAGAGCAATACCTCTCACCACANCATATATCTCGCCGCCCCAC
TATAATATCAACGCATACACATTANAATGCGATCTCATGCAAGCAACCAA
TTCACCGCATTACACTCGCACAATTCAAAATAATTACACGCGCACGAAAT
ACACCGCGTATTGACATGCACTTCTCTTACATTCACGTGTCTTATTCGCA
CGTCGTCTATTTATACCCCGTATCTATACCACGTATATTCATAACCGCGC
TTTAAATCGCCCGCCCGCTCGATAATAAGATACTACACCACCCGCAATAT
CGATGCGACGACAACTCCCCATCTAATATCTACGCTCGACTGAATTACTC
CACATTTACTATTGGCGCCGCACATATTTACCGTGCACGGCGACGCGAAT
CCGCCATATCTATCTATTCACATCCACATTATATCN

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTTCCCTCCAGCACTGTTTAGCCATCCATTC
TTGCACCCATGCACATATACACTGAGGTGCTTCTTACTTGCCAGCCACCA
CCTTCACCACAATAGTCGTAATTCATTGCTATCACAGCTTTTTGAATGGA
TGAATTAATTAATATTTATTAATTTTGTCATCATAGGCCTCACTGAGGAG
ACTCTGAGGACCTGAAACTTGGAAACTGGCAATGGGTGTCACAGAGAGGA
TAAGAGATAGATGTCAGAGCTGTAGAGATGGCTCAGTGGTTAAGAGCATT
GACTGCTCTTCCAGAGATTCTGAGGTCAATTCCCAGCAACCACATGGTGG
TTCACAGCCATCTGTAATGGGAACTGATGCCTTCTTCTGGTGGGTTTGAG
GACCACTACCGGGGACCCACCCAATTGGCGGGTGGTGCTTCCCCCTTCTA
TTCACTTTTCTCCCCCCCCTTTTTCTCTTCTCTTTTTTCTCCCCCTCTCC
CCCCCTTTTTCCTTTATTTTTCTCTCACTTTCCATCTTCTAATTTCACTA
TTCTCTTTTTTCTTTTCTCCCGCCTCTCTAACCTCTTTTCTTTTCCCTTT
TTTCCTTCCTCTCTCACAAATTTCTTTTTTTCTCTGTTCCTCCCCTCTAC
CCACCATCTTTCTTCTCCCCCTTTTTTTCCCTCCTTTCGTCCCCTCTCTT
CTTTTTATCTTTCTTTTTTCCATTGCTCTTCTTTCTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_a24.g1 MSMg01no397_a24.g1 CHROMAT_FILE:
MSMg01no397_a24.g1 PHD_FILE: MSMg01no397_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:22 2005
         (331 letters)



>mm_chr3_56554278_56555008
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttccctccagcactgtttagccatccattcttgcacccatgcacatatacactgagg 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 accttccctccagcactgtttagccatccattcttgcatccatgcacatatacactgagg 260

                                                                       
Query: 61  tgcttcttacttgccagccaccaccttcaccacaatagtcgtaattcattgctatcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttcttacttgccagccaccaccttcaccacaatagtcgtaattcattgctatcacag 320

                                                                       
Query: 121 ctttttgaatggatgaattaattaatatttattaattttgtcatcataggcctcactgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttgaatggatgaattaattaatatttattaattttgtcatcataggcctcactgag 380

                                                                       
Query: 181 gagactctgaggacctgaaacttggaaactggcaatgggtgtcacagagaggataagaga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 gagactctgaggacctgaaacttggaaactggcaatgggtgtcacagagaggttaagaga 440

                                                                       
Query: 241 tagatgtcagagctgtagagatggctcagtggttaagagcattgactgctcttccagaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatgtcagagctgtagagatggctcagtggttaagagcattgactgctcttccagaga 500

                                          
Query: 301 ttctgaggtcaattcccagcaaccacatggt 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 ttctgaggtcaattcccagcaaccacatggt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |