CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGACTTTTATCATGAATGGATGTTCGATTTTGTCAA
ATGCTTTCTCAGCATCTAACGAGACGATCATGTGGTTTTTGTCTTTGAGT
TTGTTTATATACTGGATTACATTGATGGATTTTCGTATATTGAACCATCC
CTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTCTTAT
TGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCATCG
ATATTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTT
TTGTGGTCTAGGTATCAGAGTAATATTGGCCCCCTAATTTGACTTGCTTA
CAGTCCTTTTTTACCTCTCTCCCTGCGTATCCACTTTTATATGAACTTGT
ATTTCACCCCCTTTCCCCCCCTGCATTTATCCCTTTTTGCTTTACCATCC
GCCCCCCGACTTTCCTTTTCTTTTCCCCTCTTTTCCCCCCTCTCCTTCTT
TTTTTCCTCTTCTCCCTTCCTTTCCTCCCATTTTTCCCCTTCTTCTTTCA
TCCCTCTTTCCTTTCTTCCCCCCTTTTTCCCCTTTTCCTTTTTTTCCCTT
TTCCCTCCCCTTTTATTCCCCCCCCTTATTTTTTCCCTTTTCATCTTATT
ATTTATTCCTTTTTATCTCCCCATTTTCTCCCTCCCTCTTTATCCTTTCC
TTATCCCTTCTCN

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCAGGAACCTAGAAAAAGACCATAT
CCTGGCTCCTCATTGACTTTCACAAAAGTTCATACATAACTAGCTTTCTA
TTACAAACCAGAAAAACCTAGCTAGGCATGCTAATTCCCACAATGGATTG
GGCTCTCGAGTCTTGATTAATATCAATTAATACTCAAGAAAATCCCTCAA
GGCTTGTCCACCAAAATCCTATTTAGGCAATTACTTAATTGAGGCTCTGC
TGTTAGATTACTATGCCAAGTTGACAATTAAAACTAACTAGGAAAACCAT
GTCACTGTCACAGGAATTACAAGCAGGAAGAATGCATAATAACGTTTAAT
ATTTCAAAGATGGTCTTTGAAAATGCAAGGCATGTAGCCAGAAGCATTTC
CATGGTTCATTTTTATTGTGAACTTGTCAGAATCACACTTTGAGAGTCTC
AGTGAGGAATTGTGTGTATCTCTCCTGGCCTGTGCCCATGTTTGTGCAGA
ATTATCTTAATGATTATATCACTTGGTATAGAAAGATCCCAGAATACTTT
GGGCATGCAACAATTCTCGGGTTTTAGATCCTGGCACCGCCTAGGATTTC
AAGTATTGCCCCTAACATACAACCTCATCTGACCTTTTTCCGCCATTCTG
TTCCCCGTTATCTGCACGTCTTCTGTTATACATTCTACCTACTTCCATCT
TGTCTTTATTCTTCATTTTCTCG

Query= MSMg01no397_c04.g1 MSMg01no397_c04.g1 CHROMAT_FILE:
MSMg01no397_c04.g1 PHD_FILE: MSMg01no397_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:27 2005
         (420 letters)



>mm_chr3_25941602_25942421
          Length = 820

 Score =  804 bits (416), Expect = 0.0
 Identities = 419/420 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaggaacctagaaaaagaccatatcctggctcctcattgactttcacaaaagttcata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcaggaacctagaaaaagaccatatcctggctcctcattgactttcacaaaagttcata 260

                                                                       
Query: 61  cataactagctttctattacaaaccagaaaaacctagctaggcatgctaattcccacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataactagctttctattacaaaccagaaaaacctagctaggcatgctaattcccacaat 320

                                                                       
Query: 121 ggattgggctctcgagtcttgattaatatcaattaatactcaagaaaatccctcaaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattgggctctcgagtcttgattaatatcaattaatactcaagaaaatccctcaaggct 380

                                                                       
Query: 181 tgtccaccaaaatcctatttaggcaattacttaattgaggctctgctgttagattactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtccaccaaaatcctatttaggcaattacttaattgaggctctgctgttagattactat 440

                                                                       
Query: 241 gccaagttgacaattaaaactaactaggaaaaccatgtcactgtcacaggaattacaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccaagttgacaattaaaactaactaggaaaaccatgtcactgtcacaggaattacaagc 500

                                                                       
Query: 301 aggaagaatgcataataacgtttaatatttcaaagatggtctttgaaaatgcaaggcatg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 aggaagaatgcataataacgtttaatatgtcaaagatggtctttgaaaatgcaaggcatg 560

                                                                       
Query: 361 tagccagaagcatttccatggttcatttttattgtgaacttgtcagaatcacactttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagccagaagcatttccatggttcatttttattgtgaacttgtcagaatcacactttgag 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)