Query= MSMg01no397_g03.b1 MSMg01no397_g03.b1 CHROMAT_FILE:
MSMg01no397_g03.b1 PHD_FILE: MSMg01no397_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:48 2005
(271 letters)
>mm_chr3_56361044_56361715
Length = 672
Score = 426 bits (220), Expect = e-123
Identities = 256/270 (94%), Gaps = 8/270 (2%)
Strand = Plus / Plus
Query: 7 gaattctttgttttcctctgagccccattttttaataggg-ttatttgattttctggagt 65
||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct: 204 gaattctttgtttagctctgagcccca-tttttaat-gggcttatttgattttctggagt 261
Query: 66 ccaccttcttgagttctt----tatatatattggacattagtcccctatctgatttagga 121
|||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||
Sbjct: 262 ccaccttcttgagttctttatatatatatattggatattagtcccctatccaatttagga 321
Query: 122 taggtaaagatccttttccaatctgttggtggcctgaacttcttaatttggttttctatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taggtaaagatccttttccaatctgttggtggcctgaacttcttaatttggttttctatt 381
Query: 182 cctttctcattgtgtttcctgctgcttagtcagcagaactttgtgacagcttcttggttg 241
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 382 cctttctcattgtgtttcctgctgcttaggcagcagaactttgtgacagcttcttggttg 441
Query: 242 gctgttaggctgatgcaaatctct-tcctg 270
|||||||||||||||||||||||| |||||
Sbjct: 442 gctgttaggctgatgcaaatctctgtcctg 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space: 173706
Effective search space used: 173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no397_g03.g1 MSMg01no397_g03.g1 CHROMAT_FILE:
MSMg01no397_g03.g1 PHD_FILE: MSMg01no397_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:48 2005
(245 letters)
>mm_chr3_56554029_56554673
Length = 645
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Minus
Query: 1 atcagaatggaggggcagtccagtctacctgagcctttcattggcataagcaaccctgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atcagaatggaggggcagtccagtctacctgagcctttcattggcataagcaaccctgct 384
Query: 61 ctaccttaagcccagagaaaaaggagtctaagccttaaacctctaacctctgaggtacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ctaccttaagcccagagaaaaaggagtctaagccttaaacctctaacctctgaggtacca 324
Query: 121 cactgtggactctggaatcagagtcttgaattttatcatatgcctgtcaccagctgtgag 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 323 cactgtggactctggaatcagagttttgaattttatcatatgcctgtcaccagctgtgag 264
Query: 181 accaagtctgcagtcttgcagacccaggagcttgtgccagccaggttttggtggttttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 accaagtctgcagtcttgcagacccaggagcttgtgccagccaggttttggtggttttgg 204
Query: 241 gtg 243
|||
Sbjct: 203 gtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
