CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCTGAGAATTCCCAACAACAACAAACCACACACAAACCACCCTGACC
TTGTCGATAGCTGTGACATTAATAGCTGACCCATAAGTTCAAAATACACC
ATTGCTTTGCTGACCAAATCATAATAACCCACCATAGGTACAAGCAAAGT
GAGTCACTAGGCCAGAGGTAGTCACTATGCTGCAAACCAACCAATGCCTG
AAAAAGTTACTTGCTGCATCAATGAAAATAAGCCTGCTACCCTGTTGCTC
AAATCTGCCCCTTACAAGGTATAAAAAGTGTGTTTTATCTTTGTTCTGGG
TCTCTCCTCTGTCCTGCGTACTGAGAGGGGGGTTCCCAACATGTTGGATC
ATTAAAAAAAACCTCATGCGGTTTGCAGTGATGGTGGTCTCTGTGGTCTT
TGTAAGTGAGGGTCCTTTGATGAACTTCTGTACTGGGAATTGTGCATTTA
GTATTAAGTCTGCTGGTTAAGCTTTCCTTTCTTTTTGTTCAAGTCACCTT
TCTTTCAGCAGAGGTATTAACAATGTTCAAGAAGGGATTAACTTAAAGCA
CAGATGAGATGTCCATGTTTTTCTATTTCTCCGGCGCCTAGAACTACCGG
CAAATTTTCAATCTGCATTCAACAACTCTCTAGTGTCTGAACAATCTTGA
ACACCTGCTTTGGGGAACATTTTCCCCTGGN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCTTCAGGCCACTTACCCTA
AAGCACATACCACCATCTGGAGGGTGTGGACACCAAGATAAGAACTCAGA
ACACAGTCTCTGGGTTGTCCTCTGTCCCATAGCTGGGCCCTCCACAGAGA
CCATGTTCAGGTGTGTGCTGCTTCTTTCTGTCTGGACGTGTGGTTCTCCC
CAGGAGGACACTTGGGCAATTTTGAACAGTATGATAACAAGATGACAGGG
AAGCCTCTCTGGTGTCCCAAGGTTTGAAGACGGAGGTGGTGGTTCCGGAG
TCTCTATACATCAGGAGAGAGAAAAGAGTTTCCTCTTACAGGTGAGCATC
AACATCTGTGACACTGAAAGCTCATCTTGTAACATTAAATCTCAGGTCAA
TGGTCCCTCTGGACATGTCATCCTTGGTTCTAATAGGATTCTAACAAAGA
GATTTGAAAATCCAAGTATGTAAGGATAGAAGGATTCTTATCAGGGCTTC
ATTTAGAATAGGGCCCATAGCCCACTAACAGATTCTCGTACATTTCTAAC
ATTACTATTATTGGAGCTCACCCCTTGCCTTTTTGGGTTTATTTGGCCCT
CGTCTAACCTCCTTTGACTTAGCACCATCTATGGTGGTGTAGTCCTGCAT
TTCATAACTCTTGTCCTCTTCCTAAATCCTTTTCCCATCCCCTTCTTTTA
TTC

Query= MSMg01no397_m02.g1 MSMg01no397_m02.g1 CHROMAT_FILE:
MSMg01no397_m02.g1 PHD_FILE: MSMg01no397_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:17 2005
         (395 letters)



>mm_chr3_18539359_18540153
          Length = 795

 Score =  746 bits (386), Expect = 0.0
 Identities = 392/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcttcaggccacttaccctaaagcacataccaccatctggagggtgtggacaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttcttcaggccacttaccctaaagcacataccaccatctggagggtgtggacaccaa 260

                                                                       
Query: 61  gataagaactcagaacacagtctctgggttgtcctctgtcccatagctgggccctccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataagaactcagaacacagtctctgggttgtcctctgtcccatagctgggccctccaca 320

                                                                       
Query: 121 gagaccatgttcaggtgtgtgctgcttctttctgtctggacgtgtggttctccccaggag 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 321 gagaccatgttcaggtgtgtgctgcttctttctgtctggatgtgtggttctccccaggat 380

                                                                       
Query: 181 gacacttgggcaattttgaacagtatgataacaagatgacagggaagcctctctggtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacttgggcaattttgaacagtatgataacaagatgacagggaagcctctctggtgtc 440

                                                                       
Query: 241 ccaaggtttgaagacggaggtggtggttccggagtctctatacatcaggagagagaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaaggtttgaagacggaggtggtggttccggagtctctatacatcaggagagagaaaag 500

                                                                       
Query: 301 agtttcctcttacaggtgagcatcaacatctgtgacactgaaagctcatcttgtaacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtttcctcttacaggtgagcatcaacatctgtgacactgaaagctcatcttgtaacatt 560

                                             
Query: 361 aaatctcaggtcaatggtccctctggacatgtca 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatctcaggtcaatggtccctctggacatgtca 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)