BAC Information

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BAC

Clone NameMSMg01-397N01
Chromosome3 (Build37)
Map Location 23,764,316 - 23,764,551
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N01.T7 (MSMg01no397_n01.b1)MSMg01-397N01.TJ (MSMg01no397_n01.g1)
ACCAG498066AG498067
length781767
length of high quality
(start - end)
48 (114 - 161)237 (76 - 312)
definitionCHROMAT_FILE: MSMg01no397_n01.b1 PHD_FILE: MSMg01no397_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:22 2005CHROMAT_FILE: MSMg01no397_n01.g1 PHD_FILE: MSMg01no397_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAAATACTCCGCCCGCCAAAGACCACTTTTTCAAACGACCGCGGAANN
NCNTGTTGACATAACACGGGCCGNNAAACATCCACATAAAGCTATTGCTT
AAAATGATATCCCCATCATTTCTTTTGTCTTTAACTGCATGTTTCATTTA
CTAAATGAGCTACAATTCTTAGCAGTCCATTTTTATGGCCAAAATTTCAT
TCTAGCAGCTGATATTTGACATCACACTTATGTAGTACTTTTTAACTTGC
CAAATTCTCATCAAATAACATTCCCTTTTATACCATCTGCGCAGAAAACT
TCATTTTATTTTTATTCACACTGCTTATAGCCCTGTTGATGACATAGTAC
AACGCTTATTTTATTAGTTTGATTACCAAAAGGCTCTCATGGATTACCCC
CCAGTACCAATTTTTTATAACCGACTATCCTACGGTGATATTTATTACAC
CGTTCCCACTTTCTGCTTTCTCCCATTTTATTTCTCCGTACATTTCTCTA
ACCCTCACTTCCTCATACTCCCACATCTGTCAATTCATTAACCCCGCCTA
TCTTCTCCTCTACCCTCCACTTATATCTTCTCACCCACCCTTTCCTCCTA
TTCTTTTTCCTATCTTATTCTCCCCCCCTTTCTTTCCTCCCTTCCTCTAC
CACTTTACTCTCCCCTATTCTATTTTCACCTCACTTTTTTACTTATCGTC
CCTTCGCCCCTCCCCCCTTATCATTACCCCATTTGCTCTCATCTTATCCC
GTCATGCTANATTCGTCTCTTATTCTGTTCC
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGTAAACTCTTCTTATGTCTCTTA
ATTTATAAAGAAAATGAAGTTGAATAGGAACAATGAGATAGCTATGAAAA
TGTGGCAAATTCTTAGACACTATGGAGATTTCAGAAAAAATGTATAATTT
AATCAATAAATATTGTATATTTTATAATTCATCATTATTGTACAGTTTTA
TTCCTACAGGTGGAGGTGTAATATGGATGGCAATTATTTTCTGTTGCCCT
AGCATATGTTAATGCTCTTATTGTTTACGTGAGTCTCACAGACTTATCTT
CATAACGTATCATTTAACCTCCTATTTCAGAGACTCAAGATGTGCACAAC
ACTACCAATTTTATCTCCCCCCTGATCTATTATCACTACATATACTTTGC
CTATTCCTGTACTGCTTTTCCTCCTATTTTTTTTTTCCCGTCCGAACTCC
TCCCCTGTTCTTTCTTTCCTTTCCCCCCCTTCAGCCCCCCCATACCCCCC
TTTCCTCTCTCCTTCCCCCCCTCATTCCCATTCTTCTCTTGTTTTCACTC
CTCTCGCCCACATCCTCTTCTCAACTTTTTTTCCTTCTCTTCTCATTTTC
TCTCTTTTTTTTCATATCCCCTTTACCTTACTTTGTCTAAAACTGTGTTG
TTATTTCCTTTTTCTTCCAGCTTCCTTATAGCATCCTATTTTTATTCTTT
TCCGTCACTCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n01.g1 MSMg01no397_n01.g1 CHROMAT_FILE:
MSMg01no397_n01.g1 PHD_FILE: MSMg01no397_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:22 2005
         (237 letters)



>mm_chr3_23764243_23764879
          Length = 637

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtaaactcttcttatgtctcttaatttataaagaaaatgaagttgaataggaacaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atgtaaactcttcttatgtctcttaatttataaagaaaatgaagttgaataggaacaatg 250

                                                                       
Query: 61  agatagctatgaaaatgtggcaaattcttagacactatggagatttcag-aaaaaatgta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 agatagctatgaaaatgtggcaaattcttagacactatggagatttcagaaaaaaatgta 190

                                                                       
Query: 120 taatttaatcaataaatattgtatattttataattcatcattattgtacagttttattcc 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 189 taatttaatcaataaatattgtatattttatagttcatcattattgtacagttttattcc 130

                                                                   
Query: 180 tacaggtggaggtgtaatatggatggcaattattttctgttgccctagcatatgtt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tacaggtggaggtgtaatatggatggcaattattttctgttgccctagcatatgtt 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)