BAC Information

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BAC

Clone NameMSMg01-397O16
Chromosome3 (Build37)
Map Location 152,008,425 - 152,008,668
singlet/doubletsinglet
Overlap genenone
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik
Downstream geneUsp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397O16.T7 (MSMg01no397_o16.b1)MSMg01-397O16.TJ (MSMg01no397_o16.g1)
ACCAG498143AG498144
length806775
length of high quality
(start - end)
447 (39 - 485)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no397_o16.b1 PHD_FILE: MSMg01no397_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:30 2005CHROMAT_FILE: MSMg01no397_o16.g1 PHD_FILE: MSMg01no397_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCC
TAAATTTTACCATTAGAATTCTGCTCACAAGCTAATTGCTCTAGATTTAC
AACACAAGCAGGAATACATCCCTTTAGGCCATAAAACTATTAAGTAAAGG
TTATAAAAGGAATGAACGATTTATTGTAAGTGCAAGGACAGAAGAGAATA
TATTGACTGGGTTTATCTATCAAAACTTCAGTATTAACTTAGACACAAAA
AATATAGGTTTAGACTCTCAATGAACCTGTGGAGCTGGTGACAGACAGTG
AATGTCTGGTGAGATAACGACCCTTAACGGAAACACATGTAACAACATGT
CACATCTCTGTTGTGACTTCTTGTTCAATTTATTATATGAATTTATGTCT
GAACTTTTGGGATACCATGTGACCTTCTCTCCTGAAAAGGTACAAAAAAC
TAGGAACGATGACATTAAGGAGGCGGGAGAGAGCAGAATTACTAGTTCAG
AGAATAGGACAGAGCATTATAGAGCTGAGTAGAGAGGCAAAGCACGTGAA
ACCCCCGAGAGAGAGAGCCGAAAGAGCCCTTGTAGAGAACCCAGAGCACC
CGGCCGGCCTTTTCTTACTGAACGGGAACAGGCGTTTTTCCTAACCATTT
TGAGGTCCCTTCCCTTCGATAAAAAAAAGTTAAGAAGTTTTTCTTTTTCC
CCTCCCCCAAAAGTTGGACACTCTTTTTTTCTTGTTAGGTAGGGTAGCTT
TTTTTTGTGGGACACTCGTCCTCTCTCCTTTCATGGTCACATCATATCCA
AAAGGN
TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAACTGCAAAGTTGAAAAAGTTTGTCAGCTG
GGCATGGTGGTGTACCCCGGTAAAGCCAGGACTTGGGAGGTTGTGGCAGG
ATTGTGAGTTTGAGGCTAGCCTGGATTACAGAGTAAGACATGTTTATATG
ATTAACCCCAAAGTTGGGTGGTAGAGCATGTATCTAAATATTGTGCGAAA
TGCCAGTCTCCATCAGAAGCAGGCGACTAATCTGAGGGCTTCTAATTATT
CTGCTAGTGGAATCAGATTTTGTTAACCATGATACTCCTTGCTGTCTGGG
GCTTGGCGCAAGGGAATGAAAGCTGTGTGGGAGGCCCCATGGTTACCATC
ACTCTACCCTCGCCCTACTCCAGATATTGTTCGTTTGCTTTCTCTGTATA
TCCAACCCACACTATCGTCCCTTTTTTCTCCCCCCCCATTTTTTCTTATT
CTCCCCCCCTTCTTTCCCTTTCTTTTTATTCCTCCTTCTCTCCTCCCTTC
TTTCCTTTTTTTCTATTCTTTCCCCCTCCCCACCTTCCCCTTCTTCTTTT
CTTCATTCTCTCCCTTCTCTTCCCCTTTTTTCCTTCCCCTTTCTCCTCCT
CCTTTCCCCTTTCTTTTCTTTTCCTTTTCCCCCCCTCCCACCTCTCTCCC
TTTTTACTCCTTCTTCTCTCTCCTTCCCTCCTACTCTTTTTCGCTCCTCT
TCTCCTATTCCTTCTCCCTCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_o16.g1 MSMg01no397_o16.g1 CHROMAT_FILE:
MSMg01no397_o16.g1 PHD_FILE: MSMg01no397_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:30 2005
         (246 letters)



>mm_chr3_152008107_152008750
          Length = 644

 Score =  418 bits (216), Expect = e-121
 Identities = 238/246 (96%), Gaps = 2/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactgcaaagttgaaaaagtttgtcagctgggcatggtggtgtaccccggtaaagccag 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaactgcaaagctgaaaaagtttgtcagctgggcatggtggtgtaccccggtaaagccag 503

                                                                       
Query: 61  gacttgggaggttgtggcaggattgtgagtttgaggctagcctggattacagagtaagac 120
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cacttgggaggctgtggcaggattgtgagtttgaggctagcctggattacagagtaagac 443

                                                                       
Query: 121 atgtttatatgattaaccccaaagttgggtggtagagcatgtatctaaatattgtgcgaa 180
           |||| ||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||
Sbjct: 442 atgtctatatgattaaccccaaagttggttgg--gagcatgtatctaaatattgtgcaaa 385

                                                                       
Query: 181 atgccagtctccatcagaagcaggcgactaatctgagggcttctaattattctgctagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgccagtctccatcagaagcaggcgactaatctgagggcttctaattattctgctagtg 325

                 
Query: 241 gaatca 246
           ||||||
Sbjct: 324 gaatca 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 644
Length adjustment: 9
Effective length of query: 237
Effective length of database: 635
Effective search space:   150495
Effective search space used:   150495
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)