BAC Information

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BAC

Clone NameMSMg01-398G06
Chromosome3 (Build37)
Map Location 116,358,152 - 116,358,393
singlet/doubletsinglet
Overlap geneHiat1
Upstream geneEdg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6
Downstream geneSlc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G06.T7 (MSMg01no398_g06.b1)MSMg01-398G06.TJ (MSMg01no398_g06.g1)
ACCAG498503AG498504
length772827
length of high quality
(start - end)
242 (69 - 310)59 (115 - 173)
definitionCHROMAT_FILE: MSMg01no398_g06.b1 PHD_FILE: MSMg01no398_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:06 2005CHROMAT_FILE: MSMg01no398_g06.g1 PHD_FILE: MSMg01no398_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAATTTTTCATTACACAGCAAGACCAAGGTAGCCATTTAAGTGTTTGTC
CAGTCCCTAACTGCACATCTCAGTGCCTCTCAGTACAGTAGAGTGGCTCT
TCTGAAGCCTGGGAGCTTCAACTAAGTCTTACCTTTATCCATTATTATTA
CTCTTTTTACTTTGACTGTGACATCATCGTCGGAGTTGTTACTGTTGTTT
ATGAGTGTGAGCAGGTGCTCGTGAGTACGTCATGGATGATGCCACAAGCA
TGTGTGAGTTCTTTTGATTTGCCTCAGGACTCAGTTCTCCTTCCATCTTT
CCGTGGGTCCTGGGGACTGACCTCAGGCCTTGAGGTTTGTTTGCTGCAGC
AGGTGTTTTTACCAGCTGAACTCCATTATATTTAATGCCCTGATTAACAC
AGGACAAAGAATAGAATTATGACAATTGATACTTGGAAAAGGGTAGTTTT
GTGTCCTCTGTGCCTCATGTCCTTTGCCTGCCATTTGTTTCTGCGGTACC
TAGTGTCACCTCTTACTCCCCTTCCTAATGTTGCCCTTTTCTGACCCTCA
CCCTTCCTAATTGTACAGAGATGTTTCTGTCCTTATTCTGTCCCCTCCCC
CGTTTGACCCTTTCCATGATATCTTGCTTTTTGGTCCTATGTGCCCTCCT
CCCATTACCCCCCTATATGCCACCATTTCCATTTTCTTATTTTATGTCCC
GCTTCCTTATTTTATCTTCTTG
TGCACTGCGAGGCCTGGNGGCCGCCTGGCTCCATCACCAGGTGACCTATA
GAAGGTTCCTGGCACCCCAGGACCTCAGAGCTACCAGTGAGACCTTGTCT
CAACCACACACACACACACACACACATTTTTATTGGAAATATGTATGTTA
ATAAGTAATTGGGGTTTTTGTTGTTGNNGNNTNNNNANNGATNNTTTNTA
TTTTATATTATNTTGAATANAGAACTATGAAGTCGTTTTTTTTTTAAACA
TATCACCCCTGCCTCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCC
CCCCTTCCCTCCCTTCCCCCACCCCCCCCCCCCCCCCTACCACCCCCCTC
TTTTTCCCCCCCCCCCTCGCCTCCTTCTTCCCCTTCTCTCCTCTCCCTCA
TCCTCCCCACTCCCCTCTCCCCCCCCCCCCTTCCTTACCCCCCCCTCCCT
CCTCCCCCCCCCCCCTCCCTCTCTCCTCCTCCCCCCTCTCCCCCCCCCCC
CCCCCCCCTACTTCCCCCTCTCCTCCCCTTCCTCCCCTCTCCCTCCCCTC
CCCTCCCCCCCCTCTTTCCTCTCCCCCCCCCCCCTTCCCTTCTACTCCCC
CCCCCCCCCCTTCCATCTTCCTCCCCCCCCTCCCCCTCCCCCTCCTCTCC
CCCCCTCCCCCCCCCTCTCCCTTCCCGCCTTTCTTTTCCTTTCCCTTTCT
CCCCCCCCCCCTCTCTCCCCTCCCCCCCCCCCCTCCCTTTCCCCCCTCCC
CCCACTCCCACCCCTCTCTCCCTCCCCTCCCCCACCCCCCCCCATCCCCC
TCCCCCTCCCCCCCCCTCCCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g06.b1 MSMg01no398_g06.b1 CHROMAT_FILE:
MSMg01no398_g06.b1 PHD_FILE: MSMg01no398_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:06 2005
         (242 letters)



>mm_chr3_116357952_116358593
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaagaccaaggtagccatttaagtgtttgtccagtccctaactgcacatctcagtgcct 60
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 442 gcaagaccaaggtagccatttaagtgcttgtccagtccctaactgcgcatctcagtgcct 383

                                                                       
Query: 61  ctcagtacagtagagtggctcttctgaagcctgggagcttcaactaagtcttacctttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcagtacagtagagtggctcttctgaagcctgggagcttcaactaagtcttacctttat 323

                                                                       
Query: 121 ccattattattactctttttactttgactgtgacatcatcgtcggagttgttactgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 322 ccattattattactctttttactttgactgtgacatcatcgtcggcggtgttactgttgt 263

                                                                       
Query: 181 ttatgagtgtgagcaggtgctcgtgagtacgtcatggatgatgccacaagcatgtgtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttatgagtgtgagcaggtgctcgtgagtacgtcatggatgatgccacaagcatgtgtgag 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)