Query= MSMg01no398_i24.b1 MSMg01no398_i24.b1 CHROMAT_FILE:
MSMg01no398_i24.b1 PHD_FILE: MSMg01no398_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:19 2005
(550 letters)
>mm_chr3_44922839_44923788
Length = 950
Score = 880 bits (455), Expect = 0.0
Identities = 522/563 (92%), Gaps = 33/563 (5%)
Strand = Plus / Minus
Query: 1 agatacaaccaatggggtaaatttggctttcaaccctgatcatttcctgtaagctgccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 agatacaaccaatggggtaaatttggctttcaaccctgatcatttcctgtaagctgccag 824
Query: 61 cataggaaaaggtagttagtgtctgactgatgcagactcaaattaagtgaatgtcctggc 120
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 823 cataggaaaagg----tagtgtctgactgatgcaggctcaaattaagtgaatgtcctggc 768
Query: 121 tgtctatcaatatgtcatcccatttgtcatttctacttaactcacctccagtccacttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgtctatcaatatgtcatcccatttgtcatttctacttaactcacctccagtccacttgg 708
Query: 181 aaatattcccatttttctttttttttttttttttaggagatagtaatctacaactatatg 240
||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct: 707 aaatactcccatttttc--------ttttttttaagaagatagtaatctacaactatatg 656
Query: 241 gtgcatcccggtacctgtagcatatgcttgtggtccaggcattggggttgttctggagct 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtgcatcccgggacctgtagcatatgcttgtggtccaggcattggggttgttctggagct 596
Query: 301 ggggatggagggtcggttctggtctgttccgggaccagcattttcccctcccttttcagt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 595 ggggatggagggtcggttctggtctgttccgggaccagcattttcccctcccttctcagc 536
Query: 361 ctctccctctgctttcaactgccactgcctgctactgcagagtctcttggttgtctgtct 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctctccctctgcttccaactgccactgcctgctactgcagagtctcttggttgtctgtct 476
Query: 421 ctttcctgtctggctactttacataactgaattgaaaatgtatatatacagatagtgt-- 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctttcctgtctggctactttacataactgaattgaaaatgtatatatacagatagtgtgc 416
Query: 479 ------agtg-----taagtaagtgaaattcactttggtttttttttttctttctttttt 527
|||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 415 cttttaagtgtagtataagtaagtgaaattcactttggtttttttttttc--------tt 364
Query: 528 ttttttgagagtaaaggaaacta 550
|||||||||||||||||||||||
Sbjct: 363 ttttttgagagtaaaggaaacta 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_i24.g1 MSMg01no398_i24.g1 CHROMAT_FILE:
MSMg01no398_i24.g1 PHD_FILE: MSMg01no398_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:20 2005
(512 letters)
>mm_chr3_44785237_44786148
Length = 912
Score = 920 bits (476), Expect = 0.0
Identities = 503/512 (98%)
Strand = Plus / Plus
Query: 1 tctataataattgatcatggtgacctgtagtgttgttgatataccctccattgaagaaaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tctataataattgatcatggtgacatgtagtgttgttgatataccctccattgaagaaaa 260
Query: 61 ctgattttccctctgccagtactatcaactgtgaatagtttctaggctgctttgaaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgattttccctctgccagtactatcaactgtgaatagtttctaggctgctttgaaaatt 320
Query: 121 tgtgcccacttcccttccttcatgctggagttttggtctgctttgagctcaggtaagttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgtgcccacttcccttccttcatgctggagttttggtctgctttgagctcgggtaagttt 380
Query: 181 tctgcatgattaatctggaatagatgaaacaaaatttaacataaagctaaaaaggagaac 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tctgcatgattaatttggaatagatgaaacaaaatttaacataaagctaaaaaggagagc 440
Query: 241 tatgaacttttatttactgaaactgtttttagacttaatatttgatttgttttcaatatt 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgaacttttatttactgaaaccgtttttagacttaatatttgatttgttttcaatatt 500
Query: 301 tgaaaagttgtcttaattagccttatgcaaaatacaatttttaaattctaatcttattgg 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaaagttgtctcaattagccttatgcaaaatacaatttttaaattctaatcttattgg 560
Query: 361 aagttctataatattataacatgcttttatcaaaatttataagaaacagtgattcataca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagttctataatattataacatgcttttatcaaaatttataagaaacagtgattcataca 620
Query: 421 ttcacttaggagttttttttccaggaaaaatcatttatgacttgaaaaattcaacttttt 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 ttcacttaggagttttttttccaggaaaactcatttatgacttgaaaaattcaacttttt 680
Query: 481 aagtcatttatcattttaattcaaatggaaat 512
||| ||||||||||||||||||||||| ||||
Sbjct: 681 aagccatttatcattttaattcaaatgtaaat 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
