CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGATCCGCG
GAATTCCATCTGTATTACCGAAAAAGTGTGTGCTGTCAAAGAAGCACACA
TGATCACCACATTTTGATACCTGAAGTGGTAGCATGATAATAACTGTGTA
AAACAGCGACTTCCTTCTCTCAAAATAATTACGGCTCTCTAGAAACCAGC
ATCTGTGCTGCCAGATGTTTCTGTCAAACACATAAGCAATGGGTTTGAAC
ACTGTGCATGTCTGGCTGCTATCCAATAGTCTATTATTACTGCAGAAGTG
GTGGCTTTCTGGAGTCCACAGTGTTAAGTACCATGGAACATTAATCCTGT
TCCATCAAACCTGAAAGTTTTCACCAGTAATGGGTTGTGTATTAATTCAG
TATCAAGCCACTAATTTAGTGTTGACAGACAATTTTATAGTGATGCTTAA
AATGGAAGAAATACAAATGCTAACATTTAATGATACTATTAAAAATGGAA
AACTAATTATAAATCAAAATGGTGTTACTGTTTTTACCACAAAAAATGAC
ATCATAGCATGAATGCACTAAACATTATTTTATGAAATATATAAGAAAAT
ATTACTTCTTAAAGAAATGATTCAAAGTGAGTATAATTGATAGCTATAAA
ACACGTTAGCATCATTTTACAGTCAACATTACTAAGACATTAAAATTTTG
ATAATGACATAAGGTGAGTAACTAATTTGGCGGCA

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAACAGATGGTGGATACAAGTCTGAT
CTTGTTTGGAAATAGTCATTATAGGTACAGGTACAGGTAAAATGAGTTAA
AATAGATTAGACACTCTAGTATTTGTAATAAAGTCATTTGAAATATGGAG
ATCCAGAGAGATTCCATGTGGTAGAATTAGATGATAGACTGGTACATCTA
CACATTAATTTAGGCTGTGGACTGTTGTCAGACAGAGTAGAGAATACCCA
GGAAGAATCAACTTTATCAGTATTTTGCTACCAGACGTCTTGTCTTCAGG
ACTGCAAACTTAGAACTGATTTTTTAATGCCTCCATTTAATGGTTATTAG
TTAGGATAGCTCCAGGGAACAAATATTATGAGCTGCTAATAAACAAAAGG
GAATCCTTATTACGCCAGATTAAAGAAAAGCCTGGCCTTGAAAAGTGTAT
AAGGCATAAGAAATGAAGGTCTCTTTCATTCCACGATGATACCTTTATAA
AACCAGTAGGCAATCCTATTGTGACTTCAACAAGGAAGGTCGGAGGAAGG
CTGAAGGCAGACGCGAACCGGGTGTCAAAATGTCTCTGATTCTCAACATC
CTTCTCTCATCAGGACGTCTATTTAAACTCACTCAACGTCCCTATCTGAG
TTCCAAATTTTCATCTACACTTGTG

Query= MSMg01no399_a19.b1 MSMg01no399_a19.b1 CHROMAT_FILE:
MSMg01no399_a19.b1 PHD_FILE: MSMg01no399_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:58 2005
         (685 letters)



>mm_chr3_24413609_24414693
          Length = 1085

 Score = 1286 bits (665), Expect = 0.0
 Identities = 677/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatctgtattaccgaaaaagtgtgtgctgtcaaagaagcacacatgatcacca 63
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccatctgtaaaactgaaaaagtgtgtgctgtcaaagaagcacacatgatcacca 263

                                                                       
Query: 64  cattttgatacctgaagtggtagcatgataataactgtgtaaaacagcgacttccttctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattttgatacctgaagtggtagcatgataataactgtgtaaaacagcgacttccttctc 323

                                                                       
Query: 124 tcaaaataattacggctctctagaaaccagcatctgtgctgccagatgtttctgtcaaac 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaaaataattatggctctctagaaaccagcatctgtgctgccagatgtttctgtcaaac 383

                                                                       
Query: 184 acataagcaatgggtttgaacactgtgcatgtctggctgctatccaatagtctattatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acataagcaatgggtttgaacactgtgcatgtctggctgctatccaatagtctattatta 443

                                                                       
Query: 244 ctgcagaagtggtggctttctggagtccacagtgttaagtaccatggaacattaatcctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgcagaagtggtggctttctggagtccacagtgttaagtaccatggaacattaatcctg 503

                                                                       
Query: 304 ttccatcaaacctgaaagttttcaccagtaatgggttgtgtattaattcagtatcaagcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccatcaaacctgaaagttttcaccagtaatgggttgtgtattaattcagtatcaagcc 563

                                                                       
Query: 364 actaatttagtgttgacagacaattttatagtgatgcttaaaatggaagaaatacaaatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actaatttagtgttgacagacaattttatagtgatgcttaaaatggaagaaatacaaatg 623

                                                                       
Query: 424 ctaacatttaatgatactattaaaaatggaaaactaattataaatcaaaatggtgttact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctaacatttaatgatactattaaaaatggaaaactaattataaatcaaaatggtgttact 683

                                                                       
Query: 484 gtttttaccacaaaaaatgacatcatagcatgaatgcactaaacattattttatgaaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttttaccacaaaaaatgacatcatagcatgaatgcactaaacattattttatgaaata 743

                                                                       
Query: 544 tataagaaaatattacttcttaaagaaatgattcaaagtgagtataattgatagctataa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tataagaaaatattacttcttaaagaaatgattcaaagtgagtataattgatagctataa 803

                                                                       
Query: 604 aacacgttagcatcattttacagtcaacattactaagacattaaaattttgataatgaca 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aacacgttagcatcattttacagtcaacattactaagacattaaaattttgataatgaca 863

                                
Query: 664 taaggtgagtaactaatttgg 684
           |||||||||||||||||||||
Sbjct: 864 taaggtgagtaactaatttgg 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no399_a19.g1 MSMg01no399_a19.g1 CHROMAT_FILE:
MSMg01no399_a19.g1 PHD_FILE: MSMg01no399_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:58 2005
         (371 letters)



>mm_chr3_24542185_24542955
          Length = 771

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaacagatggtggatacaagtctgatcttgtttggaaatagtcattataggtacaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctaacagatggtggatacaagtctgatcttgtttggaaatagtcattataggtacaggta 512

                                                                       
Query: 61  caggtaaaatgagttaaaatagattagacactctagtatttgtaataaagtcatttgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caggtaaaatgagttaaaatagattagacactctagtatttgtaataaagtcatttgaaa 452

                                                                       
Query: 121 tatggagatccagagagattccatgtggtagaattagatgatagactggtacatctacac 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 451 tatggagatccagagagattccatgtggtagaattagatgatatactggtacatctacac 392

                                                                       
Query: 181 attaatttaggctgtggactgttgtcagacagagtagagaatacccaggaagaatcaact 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 attaatttaggctgtggactgttgtcagacagagtagagaatactcaggaagaatcaact 332

                                                                       
Query: 241 ttatcagtattttgctaccagacgtcttgtcttcaggactgcaaacttagaactgatttt 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttatcagtattttgctaccagatgtcttgtcttcaggactgcaaacttagaactgatttt 272

                                                                       
Query: 301 ttaatgcctccatttaatggttattagttaggatagctccagggaacaaatattatgagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttaatgcctccatttaatggttattagttaggatagctccagggaacaaatattatgagc 212

                      
Query: 361 tgctaataaac 371
           |||||||||||
Sbjct: 211 tgctaataaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)