CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAAAATATTCATTTACTTCTTCCATAGGTATTAAAAGAAT
TTCCTGGATAAAGTTGGCATTAGAATCATTTGTTGAGGGAGCCGAGAATG
GCTCAGTAGTTGAGAGCACTTGCCAAGGGCCTATGTTTGGTTCCCACACC
CAGTGTACCTCCAGTCCCAGGCATCCCTTGCCCTAGTCTGGTCTCCACAA
GCATTGCATAATATACTGCACAGACTTACATGGAGGCAAAATGACCATAC
ACATAAAAAGGTTTTAAAACATCCTAAAGGCTAGTTTCAGTTCGCAAAAG
AATATTCTGGACCTATTTCGATGAGTGAGTCTGGATTTCTTCACCTAAGC
ATGAAGCCTCTATGGATTGCACAATCTGGATCCTTCAGTTTCCGTGAAGC
CTGTGTGAAGAGTAATCTTGACTGTCGACCTGATGAGAATTAGAATCATA
AAGCGGAAACAAGCCTCTTGGTAAGGTCTGTGTTGGGGTTTCTAGACTTT
GCCAGTTGGGCTGGGAACATCCACTGTAAATGGCGAGTGGCGCATTCCAT
GAGCTGAGGCTTCAGACTGTATAAAAATGGAGACGTTCAGCTCAGTGCAA
GCATTCACCTCTCTCTCTCTCCAGACAGCAGAATTAATGTGGCCCGCTGC
CTCAAACTGCTGTCATAA

TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGGTTTTTTTCTTTCTTTTTT
TTCTTTTTTTCTTATTTTTTTATTTTTTTATTTTTCGAGACAGGGTTTCT
CTGTATAACCCTGTTTGTCCTGGAACTCTCTTTGTAGACCAGGCTGGCCT
CGAACTCAAAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGGTTCAAGG
CATGAGCCACCATGCCCGACATGTTTGGAATTCTTATACTACAAAATCTA
GACATTTACTTCTTATCACAGTAAGAACTCTAATATGCTTATGATGGCAT
CTTTTGATAAAAGTAATGCCACTTAATCCTAAAGTTTACAGATGCCTGAA
ATTAGTATTCCTGATTTGATAACCATTACTTCTCGAATATTTTATTGTAC
AAACATAGAAGAGGGAATCTTAAGCTAAAATTTAATGAGGAAATTAAACA
TGAATGCTGGTTACTATACTATAAAGACCTTACATAACTATCGTTAATAA
TTTTATAGCCCTCATTTTACCTTTTTTTATCACCATAGGAAACATTCCAC
CCTTTGTTTTTGATTATCTGACCACTAGCCTTTCTGCACATACTGTCCAC
CCTTTATATTATTTTTTTCTGCGCCCCCCCGTCTATGTCCCCTTTTTCCC
CACCCGCTTT

Query= MSMg01no399_e07.b1 MSMg01no399_e07.b1 CHROMAT_FILE:
MSMg01no399_e07.b1 PHD_FILE: MSMg01no399_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:14 2005
         (579 letters)



>mm_chr3_125599421_125600399
          Length = 979

 Score =  988 bits (511), Expect = 0.0
 Identities = 557/573 (97%), Gaps = 3/573 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataaaatattcatttacttcttccataggtattaaaagaatttcctggataaag 64
           |||||||||||||||| |||||||||  || |||||||||||||||||||||||||||||
Sbjct: 208 gaattcataaaatatttatttacttc--cc-taggtattaaaagaatttcctggataaag 264

                                                                       
Query: 65  ttggcattagaatcatttgttgagggagccgagaatggctcagtagttgagagcacttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggcattagaatcatttgttgagggagccgagaatggctcagtagttgagagcacttgc 324

                                                                       
Query: 125 caagggcctatgtttggttcccacacccagtgtacctccagtcccaggcatcccttgccc 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 caagggcctatgtttggttcccacacccagtgtacctccagtcccagggatcccttgccc 384

                                                                       
Query: 185 tagtctggtctccacaagcattgcataatatactgcacagacttacatggaggcaaaatg 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 tagtctggtctccacaagcattgcataatatactgcacagacatacatggaggcaaaatg 444

                                                                       
Query: 245 accatacacataaaaaggttttaaaacatcctaaaggctagtttcagttcgcaaaagaat 304
           |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 accacacacataaaaaggttttaaaacattctaaaggctagtttcagttcgcaaaagaat 504

                                                                       
Query: 305 attctggacctatttcgatgagtgagtctggatttcttcacctaagcatgaagcctctat 364
           | || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 actcgggacctattttgatgagtgagtctggattccttcacctaagcatgaagcctctat 564

                                                                       
Query: 365 ggattgcacaatctggatccttcagtttccgtgaagcctgtgtgaagagtaatcttgact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggattgcacaatctggatccttcagtttccgtgaagcctgtgtgaagagtaatcttgact 624

                                                                       
Query: 425 gtcgacctgatgagaattagaatcataaagcggaaacaagcctcttggtaaggtctgtgt 484
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 gtcgacctgatgagaattagaatcataaagtggaaacaagcctcttggtaaggtctgtgt 684

                                                                       
Query: 485 tggggtttctagactttgccagttgggctgggaacatccactgtaaatggcgagtggcgc 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 685 tggggtttctagactttgtcagttgggctgggaacatccactgtaaatggcgagtggtgc 744

                                            
Query: 545 attccatgagctgaggcttcagactgtataaaa 577
           |||||||| ||||||||||||||||||||||||
Sbjct: 745 attccatgggctgaggcttcagactgtataaaa 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)