BAC Information

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BAC

Clone NameMSMg01-399G11
Chromosome3 (Build37)
Map Location 80,303,398 - 80,457,301
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399G11.T7 (MSMg01no399_g11.b1)MSMg01-399G11.TJ (MSMg01no399_g11.g1)
ACCAG499275AG499276
length730723
length of high quality
(start - end)
373 (49 - 421)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no399_g11.b1 PHD_FILE: MSMg01no399_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:24 2005CHROMAT_FILE: MSMg01no399_g11.g1 PHD_FILE: MSMg01no399_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,303,398 - 80,303,765)(80,457,059 - 80,457,301)
sequence
TCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCC
GCGGAATTCTTGAACTGTCCCCATTCACAACCCAAAGATATAGAAGTTAT
TTCTCAATTTAGAACATATTAATGTCTGTAATAGTCACAGTACTTTGCCC
GGATTCTTTCTTCATCACCTGTGGTCATCATGCACAAAGTCTGTGAGCAA
CCAGGATGGAGATGGCCAGGACATCTCCTAGGATTGTTTCCTCAGAAGGC
TGTCCTATGAGTAAGTCACTTCTAAAGTATGCTGAACCACAGACTTTCTT
ATTTAGGGACATATGTCTTATGAACCCACTTATCTTTTGAGTGAGTAGGT
TAAATACAAAACATGTTTCATTGTTGCTAGTGATATCTTTTGAGGCAGTC
ACAGCTTAAGTGTAATGGTAAAACTTACCTCCATCTCCATACTCAAGGAT
AGGTCTGAGAAGCAATTACTGAGATAAAATTCTCATAGACAGAGCTAAAG
ATTACTAATATAAAGGGCGAATTTACACTGACAAGGTTTAAGGTTGGATT
CATGCATTTTCTCCCTAAATCTTCAAGCTAACAGAAAAGTTTACAGTATA
TGCTAATAACAGTAAAGTCTGCCAACTACTATTGTCACTAGATGTCCTTC
ACAGTCTTTCCTCTTTTTTACCCTTATACCCGGTATAACCCATTATACGC
TTCAAAATGTTCCTTATAGTTTACCACATN
CTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGGTACCTTGGCACTACCAC
TTGAGAAAGAAATGATTTTAACAGGTGTGTGCCAGTGCAGGCTCTGATCT
CATAGGAGCACAAAGCAGAAAAAATTGTAAATGAAAACCAAGAGCATCCT
CCTATAGCTTTCCGATCAGCTTCATCCACCTAGACTCTAGGCTTCCAAAT
CCATCTAGACCCTCTGGCTTCCAAATGGCTCACACGAATACAATTGACTT
ATGAACACACAAAGATGGCCATTAATGCATTATTTCAGACCCCATATGAT
CTGTTTCTGAAATGTCCTCACATATATACCCGCAGGCGTGCTACACTATT
CTAAGTGTTTCTTAATCCACTTGTGCTAACCAATTCATTTAATCATTATA
AATTAACTTATCATCTATCCTGCGTTCATGCTACTCTGGGATATAGAGCT
GCCAATAGGTTTTGCACTACCTATCTCCTTTCTTACCTCCATTTGACTCT
AATCTTACTTTTGCACATTTATTTGTATGTTCAGCAACATTGAATGCATG
CTATCCCCGCCCAATATCGCCATTCTGCGTATACACAATCACTCCTCCCT
ATATATCGCCCATATTTTTTCTGTTTCATCACATCTCCTTCCACTCTTTC
CCCTTTTTTCCCCCCTCTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_g11.b1 MSMg01no399_g11.b1 CHROMAT_FILE:
MSMg01no399_g11.b1 PHD_FILE: MSMg01no399_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:24 2005
         (373 letters)



>mm_chr3_80303193_80303965
          Length = 773

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcttgaactgtccccattcacaacccaaagatatagaagttatttctcaatttaga 65
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcttgaactgttagcattcacaacccaaagatatagaagttatttctcaatttaga 265

                                                                       
Query: 66  acatattaatgtctgtaatagtcacagtactttgcccggattctttcttcatcacctgtg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 acatattaatgtctgtaatagtcacagtactttgcccggattctttcttcatcacctgtg 325

                                                                       
Query: 126 gtcatcatgcacaaagtctgtgagcaaccaggatggagatggccaggacatctcctagga 185
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 326 gtcatcatgcacaaagtctgtgagtaaccaggatggagatggccaggacatctcctagga 385

                                                                       
Query: 186 ttgtttcctcagaaggctgtcctatgagtaagtcacttctaaagtatgctgaaccacaga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttgtttcctcagaaggctgtcctatgagtaagtcacttctaaagtatgctgaaccacaga 445

                                                                       
Query: 246 ctttcttatttagggacatatgtcttatgaacccacttatcttttgagtgagtaggttaa 305
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctttcttatttagggtcatatgtcttatgaacccacttatcttttgagtgagtaggttaa 505

                                                                       
Query: 306 atacaaaacatgtttcattgttgctagtgatatcttttgaggcagtcacagcttaagtgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 atacaaaacatgtttcattgttgctagtgatatcttttgaggcagtcacagtttaagtgt 565

                   
Query: 366 aatggtaa 373
           ||||||||
Sbjct: 566 aatggtaa 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no399_g11.g1 MSMg01no399_g11.g1 CHROMAT_FILE:
MSMg01no399_g11.g1 PHD_FILE: MSMg01no399_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:25 2005
         (245 letters)



>mm_chr3_80456859_80457503
          Length = 645

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctttggtaccttggcactaccacttgagaaagaaatgattttaacaggtgtgtgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctctttggtaccttggcactaccacttgagaaagaaatgattttaacaggtgtgtgccag 384

                                                                       
Query: 61  tgcaggctctgatctcataggagcacaaagcagaaaaaattgtaaatgaaaaccaagagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcaggctctgatctcataggagcacaaagcagaaaaaattgtaaatgaaaaccaagagc 324

                                                                       
Query: 121 atcctcctatagctttccgatcagcttcatccacctagactctaggcttccaaatccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atcctcctatagctttccgatcagcttcatccacctagactctaggcttccaaatccatc 264

                                                                       
Query: 181 tagaccctctggcttccaaatggctcacacgaatacaattgacttatgaacacacaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagaccctctggcttccaaatggctcacacgaatacaattgacttatgaacacacaaaga 204

              
Query: 241 tgg 243
           |||
Sbjct: 203 tgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)