BAC Information

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BAC

Clone NameMSMg01-399G14
Chromosome3 (Build37)
Map Location 118,685,750 - 118,685,995
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399G14.T7 (MSMg01no399_g14.b1)MSMg01-399G14.TJ (MSMg01no399_g14.g1)
ACCAG499281AG499282
length717728
length of high quality
(start - end)
244 (75 - 318)---
definitionCHROMAT_FILE: MSMg01no399_g14.b1 PHD_FILE: MSMg01no399_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:25 2005CHROMAT_FILE: MSMg01no399_g14.g1 PHD_FILE: MSMg01no399_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAATCCGC
GGAATTCTTCTCTTTACCTAAATATTGTTTTGTCGTTGCTGTTTTGTTTT
TTTTGATTTTTTTTGTAACTCATTAAACCAATTATAAGATGTTCTACTTC
ATTCTGGTCTATGTCATTCTCTATAACATTGTATGTACCACATTCAATAT
ACCAATTCAACAGTAGACACTTCACTCCTATATACTATAGCCATAATATA
CTGAGAAACACCCCCTGGGGCTGTAGTGTATTAATGTAGACTAGGCAACA
TAGCCGAGATGTTTAGCTTACTTCCTAAAAACACTCCAGTCAGAGTTTAC
TTCCCATATGCTGCAGGCACTGCCTGCTGGAGAATATTCCAGTGCCATAT
ACTTCATATCACATTTCTGCCCGCTTTGTGTAGTAGCCAAGTTGGATTTG
GTGGTTTGTTAGTATGAGGCTTGTCATAAATACCCTTACACAATATATGG
TTTAACATTTGATGTGTTTGCCAGCTTTTTATATTGTGCCGACAAAGCAA
TAACGATACTTGCTGACGACATTATACTAGCACTTGTTCGACGAGTGCCA
CTCATCCGTGTTGCCAAATCTGGCCCTTGATTGCAATTTTCATCACCATG
AGAATATAAGAATCTTATCTTGTTAATTTTCCCTACCTTCTTCTCATTTG
TTCCTACTAATATCATC
TCTTCAATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTAAAACTCATGTTTAATA
ATATCATTACAAAAATACCGGCTCATGTTGGCACCTCTTGTAATCCTATT
ATCCCAGTGCTTCGGATACTAACGATTCCTTGTATACCACTGCACTTACA
GCTGGTATTGCCCGTATAATTTCCGGTTAACAGCAGACCGCCCCTCCTCC
ATGAATAAATAAGCATAAATAAATAAGTACCCTAATCAAACACATGGACA
TATAAATAAACAAATAATTGATTGATGCCACCCTATGATCTATCCCTGAC
GTGCACCCATGACCTCTACACATGTACCTATATCCGTTTTTTTCTCCCAT
GCGCTCCTACATACCTTGACCCCCTCCTTTGTTCACTCTTGCATGCAACC
GTATCCGCACGCTTACAAACTCACTTGTTTTCATTCTCGTCCACTTGTTC
ACGTTTACCTTCTCCCACCTATCTTTTATTTATATCCCCCCCCTTTCATT
GTCCTGCCCACGTCTGCTCGTTATCTCTAACCCCCCTCAATCTTTCTCAG
TATGGCCCCCCCCTCCATTCCTTTCCCCCCCGAACCTTTCTTAACCTTTT
TATCAGAATTTCTATTCCCCCGCGCCTATCTTCCCTCCCCTACTTTTTCC
TTACTCATTTTATTTTTCCCCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_g14.b1 MSMg01no399_g14.b1 CHROMAT_FILE:
MSMg01no399_g14.b1 PHD_FILE: MSMg01no399_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:25 2005
         (244 letters)



>mm_chr3_118685550_118686195
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%), Gaps = 2/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttttgtcgttgctgttttgtttt-ttttgatttttttt-gtaactcattaaaccaat 58
           |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 201 ttgttttgtcgttgctgttttgttttgttttgatttttttttgtaactcattaaaccaat 260

                                                                       
Query: 59  tataagatgttctacttcattctggtctatgtcattctctataacattgtatgtaccaca 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tataagatgttctacttcattctggtctatgtcattctctataacattgtatgaaccaca 320

                                                                       
Query: 119 ttcaatataccaattcaacagtagacacttcactcctatatactatagccataatatact 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaatataccaattcaacagtagacacttcactcctatatactatagccataatatact 380

                                                                       
Query: 179 gagaaacaccccctggggctgtagtgtattaatgtagactaggcaacatagccgagatgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaacaccccctggggctgtagtgtattaatgtagactaggcaacatagccgagatgt 440

                 
Query: 239 ttagct 244
           ||||||
Sbjct: 441 ttagct 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 646
Length adjustment: 9
Effective length of query: 235
Effective length of database: 637
Effective search space:   149695
Effective search space used:   149695
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)