Query= MSMg01no400_a18.b1 MSMg01no400_a18.b1 CHROMAT_FILE:
MSMg01no400_a18.b1 PHD_FILE: MSMg01no400_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:13 2005
(483 letters)
>mm_chr3_54947925_54948807
Length = 883
Score = 901 bits (466), Expect = 0.0
Identities = 472/474 (99%)
Strand = Plus / Minus
Query: 1 gcctctagtcagtcatcattccggaagtatccttctccttgcccagcagttttactcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gcctctagtcagtcatcattccggaagtatccttctccttgcccagcagttttactcctg 615
Query: 61 tcatttagaaggtttgctcaggattgtactctgtgagattgttctcaatcttgacagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcatttagaaggtttgctcaggattgtactctgtgagattgttctcaatcttgacagatg 555
Query: 121 agccagctgggcttccacatcagactccagctatttgcatacgtcatcttgaatgcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agccagctgggcttccacatcagactccagctatttgcatacgtcatcttgaatgcccag 495
Query: 181 ctcattggaacctttactgaacccaaggcagcactgggctgcaaccacagggacccagcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctcattggaacctttactgaacccaaggcagcactgggctgcaaccacagggacccagcc 435
Query: 241 aacccagccaatcactggattataactgatgttatgcagccctatgggagggtggtctgc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacccagccaaccactggattataactgatgttatgcagccctatgggagggtggtctgc 375
Query: 301 tacacagtagcaataaccagaactgtcctgtgtgctggcatattaagatgtggcaatagc 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 374 tacacagtagcaataaccagaactgtcttgtgtgctggcatattaagatgtggcaatagc 315
Query: 361 agtaacaatggccaggtttttgtcacaaccaattgtgtgacctaagaagtaattgaaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtaacaatggccaggtttttgtcacaaccaattgtgtgacctaagaagtaattgaaatt 255
Query: 421 cctcaatcctgttttttaaataaatggggagaataacaactctccattcctgag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctcaatcctgttttttaaataaatggggagaataacaactctccattcctgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_a18.g1 MSMg01no400_a18.g1 CHROMAT_FILE:
MSMg01no400_a18.g1 PHD_FILE: MSMg01no400_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:13 2005
(415 letters)
>mm_chr3_54778375_54779188
Length = 814
Score = 733 bits (379), Expect = 0.0
Identities = 403/411 (98%), Gaps = 1/411 (0%)
Strand = Plus / Plus
Query: 5 ctctcttgaactgcagctgtacaggatttatggggaggggctttcttgaggggcctagtg 64
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 205 ctctcttgaactgcagctgtacaggatttatggggaggggctctcttgaggggcctaggg 264
Query: 65 acttatgcatgctaagcaaacttgctacccctgagctatctctccagcccagtgccaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acttatgcatgctaagcaaacttgctacccctgagctatctctccagcccagtgccaaca 324
Query: 125 actttcaggaacatttaggggctgaagtggaagacaggattctctaagaagttgtaatac 184
|||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 325 actttcaggaacatttgggggctgaag-ggaagacagaattctctaagaagttgtaatac 383
Query: 185 acctggaaggacatgacagtcagaagtgatgcatttgctgaggagaggagggacagtaag 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactggaaggacatgacagtcagaagtgatgcatttgctgaggagaggagggacagtaag 443
Query: 245 ggacagtgagggggtgcagagtaccgagtagggagtaaacaaacacctcaggaaataaag 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggatagtgagggggtgcagagtaccgagtagggagtaaacaaacacctcaggaaataaag 503
Query: 305 cttgtggatgtcttcaagtataagttttagaaatcagattataaacttcatccaacagat 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctcgtggatgtcttcaagtataagttttagaaatcagattataaacttcatccaacagat 563
Query: 365 gaaatgcatttaatctgaacagctgtttgcccagagcttcctaatttagaa 415
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaatgcatttaatctgaacagctgtttgcccagagcttcctaatttagaa 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 814
Length adjustment: 9
Effective length of query: 406
Effective length of database: 805
Effective search space: 326830
Effective search space used: 326830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
