BAC Information

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BAC

Clone NameMSMg01-400G02
Chromosome3 (Build37)
Map Location 48,566,801 - 48,567,194
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400G02.T7 (MSMg01no400_g02.b1)MSMg01-400G02.TJ (MSMg01no400_g02.g1)
ACCAG500017AG500018
length1,004760
length of high quality
(start - end)
---394 (74 - 467)
definitionCHROMAT_FILE: MSMg01no400_g02.b1 PHD_FILE: MSMg01no400_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:40 2005CHROMAT_FILE: MSMg01no400_g02.g1 PHD_FILE: MSMg01no400_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATGTTCCTCTCNTTCAAAAATAGTTGGGGGCGTGCCCCNGCCCNNGCC
ANAATTTTTTTTCCCCCCCCCCCGAAAAAGGGTGTTCGTGCTTTTTTTCC
CCCCCCCCCCCACACACCAAAAAAAGGGGGGGGGGTTTGTGTGCGCTCCC
CCCTCCCGCCCCCGCGTCCGTTTTTTTTTTTCGCCCCCCCAACACAAAAC
ACCCCGCTGAGATATTATGATCGCCAATAAAACAATATATGTCGCTGGGG
GGGGTGCGGTCTCCTTCGTTTCTTTTTTCTTACATCCCACACCCTCTCAC
ACTTTTTCTATATTATTTTTTTGTTTGATCTACCAAAAAAACAACCAACA
GACAACAGCCGTGCACGGCGATTTCTCATCGATGCCTCTTCTGCATCTTC
TAAAACATTAAACTAGTCTTTCCCTCTCTTCCCTCTATCCCCATAAACAC
ACACCGTGGGGCGCGCGGGGACTCTCCCTCCCATATAAGGTAATAATCCT
CTTCCCCAAAAAAAAAATATAACACCTCCTCCTCTCTCCTCTTCTCCCTA
CCCACCCACCTCATCCTGAAGACTACACCCCTCTCCTCTCCTCCTTTATT
TCCCTTACCTTATTTCATCTCTCGGGCATATAACTCTTCCTCCCTTTCTT
CATTTCATCACCCCTCCCTTTACTACCACACCCAATCTTATCTTATCTCT
TTTTCCCACTCTTCTATATCCCCCTCCCCTTTCTCTTCCTCCCTCTCGTG
CCTTCTCTCACGCCGCCGATACTTACCTATCATCTCNTCTCCTCCTCACC
CTTCACCTTCCTCTCCTGTTATTCTTACCATACTATTTCTTCTCTTCATA
TTTTCCACCTTATACCACATTATCCCCACCACATCTCTAGTATTACTTAC
TATCATATCTCTTCTATATATTCCATTTATTTCCCTGCACTCACACACAA
TATCTATTCTCTCACTATACTCCTTCCTATACACCACCATCTCTATTCTC
CTCG
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCCTTTTTT
AATGAGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATA
TATTAGATATTAGATTCATTAAAAAATATTCACTGAACAAATATTCACTC
GTAACTTGAAACCAGTGGTCAATGCTTGTGTATAATAAACCTGTTTCACA
GCTTGTCACAGAGTGCAAATGTTTATAATACGTGTATAGCACCTCATGAA
ATGCAGCTTGATTTAATCTTCTGATGGCCTATGGCAGGCTTTCCTTTTGT
GACTCTAGGTCTCAGTTGAATCATAAGATAATGGTACACCTCTAATACCA
ACACCCACATGTACGTATCTGGCTCTGTGTGATGACTTACCAGATGTTAG
CACTGAACATTGGGATTCAACTATAAACACACCGGAGAATCTAGTGAACT
CATTGGTAAAGGCACAACCTACAGGGGAAGGATTTCAGCACAGGGCAGTG
GTCTAAATTTTAAAAACGCCGAGTGCAATGTATAGCTCTAGGCAGCTGTG
AGCTGGAAGAAAGAAGCATTGCTTATAAACAGGAGAGAAGTCGTAGCTGT
TTATTGCACCTTAATGTGAACCTCCTGCACTATTAACCAGTGGGTCTTTT
GTTCGACCCTATTACTCGGCAATCTGTTAAAAGTGTGGTGGTTTGGTTTT
TGCATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_g02.g1 MSMg01no400_g02.g1 CHROMAT_FILE:
MSMg01no400_g02.g1 PHD_FILE: MSMg01no400_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:40 2005
         (394 letters)



>mm_chr3_48566511_48567304
          Length = 794

 Score =  762 bits (394), Expect = 0.0
 Identities = 394/394 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgaacccccttttttaatgaggttatttgattttctggagtccacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tttgtttagctctgaacccccttttttaatgaggttatttgattttctggagtccacctt 625

                                                                       
Query: 61  cttgagttctttatatatattagatattagattcattaaaaaatattcactgaacaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgagttctttatatatattagatattagattcattaaaaaatattcactgaacaaata 565

                                                                       
Query: 121 ttcactcgtaacttgaaaccagtggtcaatgcttgtgtataataaacctgtttcacagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcactcgtaacttgaaaccagtggtcaatgcttgtgtataataaacctgtttcacagct 505

                                                                       
Query: 181 tgtcacagagtgcaaatgtttataatacgtgtatagcacctcatgaaatgcagcttgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcacagagtgcaaatgtttataatacgtgtatagcacctcatgaaatgcagcttgatt 445

                                                                       
Query: 241 taatcttctgatggcctatggcaggctttccttttgtgactctaggtctcagttgaatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatcttctgatggcctatggcaggctttccttttgtgactctaggtctcagttgaatca 385

                                                                       
Query: 301 taagataatggtacacctctaataccaacacccacatgtacgtatctggctctgtgtgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taagataatggtacacctctaataccaacacccacatgtacgtatctggctctgtgtgat 325

                                             
Query: 361 gacttaccagatgttagcactgaacattgggatt 394
           ||||||||||||||||||||||||||||||||||
Sbjct: 324 gacttaccagatgttagcactgaacattgggatt 291


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)