BAC Information

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BAC

Clone NameMSMg01-400J18
Chromosome3 (Build37)
Map Location 25,197,265 - 25,197,704
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635702, EG665189, LOC100039592
Downstream geneNlgn1, LOC621017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400J18.T7 (MSMg01no400_j18.b1)MSMg01-400J18.TJ (MSMg01no400_j18.g1)
ACCAG500192AG500193
length799856
length of high quality
(start - end)
441 (72 - 512)---
definitionCHROMAT_FILE: MSMg01no400_j18.b1 PHD_FILE: MSMg01no400_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:58 2005CHROMAT_FILE: MSMg01no400_j18.g1 PHD_FILE: MSMg01no400_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCACATTTCCCCAGGAGAAGTAGATAACTAAATGAAAAAAAAA
TGAGATAGTGAGATTTAGCTCCTGAAATAATAAGTGTTTTACCATACTGG
ACTACAATCTACACTCATCCTACTCCAGAGTTGAAAGCTGATAAATACAA
GTGGCAACTGGCCTTGATATTGAGGATAATGGAAGCAAATTCAAGGGACA
GAGACTGTAAAGCCCACTCACCCCATGTCAAGGAAACAAGGAAGAGGTGG
ATGGAGATCAACAATGCAGATCCACATAGTGATAAACCAGAGAACGGCTT
GACACTGAGAATCTATAGCTTGGAAGAAAATTAATGAACAAAATTGTGCC
AAATGGACTTTATTAAAGTTTTTATTTCTGAATAATATTATATCAATAAA
ATCACATTCAAAAATAGAGAAACTGATCAAATTAAGAGAAAATATTTGAA
TTAGTGTATAAAAATTAAATGGGAAAGATTCCCTCTAATCTTTTGTCTCA
ATCATTCAAAACTGTGTCAGAAGTAGGCCCATTAAGAGGCAATTACTTTT
TGCCCTTTAGAACAAAAGGGAAATTTTTAGTAAGATAGGAAGCACTCTGC
CATTTTAAAAATAATGCCCTGAAAAAAATATGGGACCTAATTGCTTAAGA
AAATTTTGTTTATTAAAAACTAAGGGACTTACCCCTTTGTCTCGGAAAAA
TTTTTGTCCCCCTTGCTCTCCCAAACAGGGAGAATAAAAAACGGTAAGG
NCCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCTAATGTGTGTGTGTGTGTGTGTGTG
TATGTGTGTGTGTGTATCCCCCAAACAACCACAATTCACATTCAAACAAA
CTCCACTATTATTAGGGGCGGGCTCTCCCATACCTAAATCTCTTATCTTC
TCCCCAAACTCATTTTTTCATCTAATACAAAACAAAACTACCCTTATTTT
CAATATACACCCATCCCCCACTCCCTACTACTATTTATACAAACATAACG
CTCACACCCTTTTCTTCTTTCTCCCAAACAAAACCCCCTCCACACAACCA
ATTTAACAACCCCACCCCTAACATCCAACTTAGCAAAAAAAACACAAATA
AATTTTATCACCCCCCACAACTTAACAACCATAAACCACCACACTACCCT
ACACCCCACTAACCAATATCACCCCCAACACAGAACACAACTACCAACAC
AACCCACAACATAAAACACTCACACTCTACATCTCATAACATAACAATAT
CAAAACTCCCCCCAATCCTACCAATTCAAAACAACCATATCTAAACCAAA
ATTCCACATCAAAAAATATACAAACACAACACCCATCTCATCAATCAAAC
CAAATCTACACCCAACAACCCAAAATATATAAACCAATACAATATTACAT
CCCTCTAAAATCTCTATTCATATTATACATATATTACTCTACACAAAACA
TATTCCACAAATAACACAAACTTAAAACTTTACCGATAAATACACGCCCA
CTCACATGATTACTCCATTCATTATTCCTCCTCCTCATCTATATAAATTA
CCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_j18.b1 MSMg01no400_j18.b1 CHROMAT_FILE:
MSMg01no400_j18.b1 PHD_FILE: MSMg01no400_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:58 2005
         (441 letters)



>mm_chr3_25197065_25197904
          Length = 840

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaagtagataactaaatgaaaaaaaaatgagatagtgagatttagctcctgaaataat 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gagaagtagataactaaatg-aaaaaaaatgagatagtgagatttagctcctgaaataat 582

                                                                       
Query: 61  aagtgttttaccatactggactacaatctacactcatcctactccagagttgaaagctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagtgttttaccatactggactacaatctacactcatcctactccagagttgaaagctga 522

                                                                       
Query: 121 taaatacaagtggcaactggccttgatattgaggataatggaagcaaattcaagggacag 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 521 taaatacaagtggcaactggccttgatattgaggatgatggaagcaaattcaagggacag 462

                                                                       
Query: 181 agactgtaaagcccactcaccccatgtcaaggaaacaaggaagaggtggatggagatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agactgtaaagcccactcaccccatgtcaaggaaacaaggaagaggtggatggagatcaa 402

                                                                       
Query: 241 caatgcagatccacatagtgataaaccagagaacggcttgacactgagaatctatagctt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caatgcagatccacagagtgataaaccagagaacggcttgacactgagaatctatagctt 342

                                                                       
Query: 301 ggaagaaaattaatgaacaaaattgtgccaaatggactttattaaagtttttatttctga 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggaagaaaattgatgaacaaaattgtgccaaatggactttattaaagtttttatttctga 282

                                                                       
Query: 361 ataatattatatcaataaaatcacattcaaaaatagagaaactgatcaaattaagagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ataatattatatcaataaaatcacattcaaaaatagagaaactgatcaaattaagagaaa 222

                                
Query: 421 atatttgaattagtgtataaa 441
           |||||||||||||||||||||
Sbjct: 221 atatttgaattagtgtataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 840
Length adjustment: 9
Effective length of query: 432
Effective length of database: 831
Effective search space:   358992
Effective search space used:   358992
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)