Query= MSMg01no400_k05.b1 MSMg01no400_k05.b1 CHROMAT_FILE:
MSMg01no400_k05.b1 PHD_FILE: MSMg01no400_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:00 2005
(494 letters)
>mm_chr3_143854814_143855708
Length = 895
Score = 934 bits (483), Expect = 0.0
Identities = 492/495 (99%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 ccttctgtaattagagatggccttgcctctcgttcaaaatgtgcatctccaaatatttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttctgtaattagagatggccttgcctctcgttcaaaatgtgcatctccaaatatttac 260
Query: 61 gttacccattcactactctctcaactccatcctatagactaagttcattaaaattcaaat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttacccattcactgctctctcaactccatcctatagactaagttcattaaaattcaaat 320
Query: 121 gaaaataaaaacctgtaagtccttctgggcgctggcagtccttaaagaaacctccccaca 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaattaaaaacctgtaagtccttctgggcgctggcagtccttaaagaaacctccccaca 380
Query: 181 tctcatgaggtaactggctaatttgcaatt-aaaaaaaaaatctaacattctgattctta 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tctcatgaggtaactggctaatttgcaatttaaaaaaaaaatctaacattctgattctta 440
Query: 240 aatggttgctctgtattccgcccctattagtaaattaaataaaactgcactatctcatgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggttgctctgtattccgcccctattagtaaattaaataaaactgcactatctcatgt 500
Query: 300 aattaacacttaccaaataaagaaaacatcttaaacaaccccataaacctaagctgggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaacacttaccaaataaagaaaacatcttaaacaaccccataaacctaagctgggga 560
Query: 360 gaagggcaaatatgactgctctaccacggcagcgtggtttcagagttaaaactttctaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaagggcaaatatgactgctctaccacggcagcgtggtttcagagttaaaactttctaat 620
Query: 420 atgtgtgctcctcctcctcagcaagaacgcagtgcattatagaagacaaaaaagcctaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgtgctcctcctcctcagcaagaacgcagtgcattatagaagacaaaaaagcctaat 680
Query: 480 gcttttctgctagac 494
|||||||||||||||
Sbjct: 681 gcttttctgctagac 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_k05.g1 MSMg01no400_k05.g1 CHROMAT_FILE:
MSMg01no400_k05.g1 PHD_FILE: MSMg01no400_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:01 2005
(362 letters)
>mm_chr3_144029244_144030005
Length = 762
Score = 650 bits (336), Expect = 0.0
Identities = 354/360 (98%)
Strand = Plus / Minus
Query: 1 ctactcttgcttaggagttgaataggggcagaaagagtgagcccatgggtgacgccttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctactcttgcttaggagttgaataggggcagaaagagtgagcccatgggtgacgccttaa 391
Query: 61 gtcatgaagtgaaattaaggattataatttctagtgacagaagtaagaactgcttcaggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtcatgaagtgaaattaaggattataatttctagtgacagaagtaagaactgcttcaggt 331
Query: 121 tctaggccaggtggcttggcttgatccttcaagtccagactagttatgatattgcctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctaggccaggtggcttggcttgatccttcaagtccagactagttatgatattgcctgga 271
Query: 181 aacacaagaaaactatactgggtagactggattgtgacaattgagcaacagaaaaaaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aacacaagaaaactatactgggtagactggattgtgacaattgagcaacagaaaaaaact 211
Query: 241 agctattttattctttttctttggaaagcagaggcagagggatctctgtgagttgaagcc 300
|||||||||| || | |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 210 agctattttaatcctggcctttggaaagcagaggcagagggatctctgtgagttgaggcc 151
Query: 301 agagaatgctactactgagtgagaccttggtaggtgggaagaaggaagggaaggaggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agagaatgctactactgagtgagaccttggtaggtgggaagaaggaagggaaggaggagg 91
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
