BAC Information

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BAC

Clone NameMSMg01-400K24
Chromosome3 (Build37)
Map Location 139,509,300 - 139,509,680
singlet/doubletsinglet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400K24.T7 (MSMg01no400_k24.b1)MSMg01-400K24.TJ (MSMg01no400_k24.g1)
ACCAG500251AG500252
length773775
length of high quality
(start - end)
255 (75 - 329)381 (82 - 462)
definitionCHROMAT_FILE: MSMg01no400_k24.b1 PHD_FILE: MSMg01no400_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:05 2005CHROMAT_FILE: MSMg01no400_k24.g1 PHD_FILE: MSMg01no400_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAACAACTAGTCTACATTCACNANACGANTCNTATGTCCACAGATCC
GCGNGATTCTCAAAATTCCCCAAAAAAGCCCTAAAAATGAATGAACTATG
TAATCCAGCTGTACCTTGCTTTATCATATGCCCACAGGACTTGACATTCC
TCTCCACAGATGCTTGCTCAATAATGTTCACTGGCAACTCATTCACAATA
GCCAGGAAGTGGAAATAACCTAGATGCCCTACAGCATAAGAATGAACACA
TGGGACACGCATATTATGGAATTCTATTCATTTGTAAAGAAAAAAAGAAA
GCATGACATTTTTAGGAAAATGGATGGACCTAGAAAAGATTACATTGAGT
GAGGTAACCATACCATAAAGACAAAGGCCACCTATTCTTTCTGAGAGACC
TATCTTCTAAATCTTCAGACGCCCCCACTTACCTGTTAATACTACTGATA
GTAATTAAGATACCCCACTGCATTCGAATGTGGAGCAATCATCTAAAGGC
TTAATGTATGGTTATACTAACTAATTAACCCCCCTCTACTAACTACTCTT
TATATTTTTATTTATACACTCAGATCCCACATATATCCTTTCCCAAATTT
ATCTTACTTCCTCTTCTTATTTACTCCTCATTCCATATTCCCTCTCTTTA
TTTTCTTTAATTACCTCCTCCTTTCTATTTTACTTTCTCCATCTCTATTA
TTCAACTCTCTTTCATATTATATTTAATCCACTAATATATTTTTAATCTT
ATCAAAAATACACTTCGTATCTG
NNNNTTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAATGATGTGATGAATGT
AACTCAGATACTTACCTTATTTAAAATCCTTTCACAGATTCCATTTGTTA
TCAAAGAGAGCTTCATACTACACAGTCAGCACTTTTCATGATTTGACCTG
GGTTTCTCTCCTCTGTCGTGCAGGCGTCACCTCACCCCCCGTTTACTTAT
GGCCACCACAGAAACATTGCCCTATTGGCGGCATCCTCCTTAGACCCAGC
TGTGCACACTGAAGCACAGAGATAGGCACTTTCTCTAAAGGACAGTGTTG
GCTTGGAAATGCTGAATTCTAAGTTCTGACCCAATATTCAGACAAACCTG
CCAATACGAATGTGGCTACAGCTTGAAATGGTAACTGTGGTTCACGGACA
TGCACTGGAGATGACCTAATGTCATTGCTTCCCGAGCAACCAGAAAGAGC
AAGGTTTGGATTCCCACTATCCATATGAAGTGAAAGCAGGCATGCTCACC
ACCTAAAAAGCCAGCATTCCCCAGAAAAAATGAGCTTCCCAGGGCCAGCA
AACTATTCTAATTTTGCAGAAAAAGGGAGATCCCTGGGTCCACAGCTACC
CTCACAAAAAAGTCGGGAGCCAAAAACACCCTAGTCTCCCCCCCTATTTT
TAAACCCGGTGCACAACGTTGGGACCACCCCATGGGGGGGGGTGTTTCCC
CCCTAATTATATTTTCTTTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_k24.g1 MSMg01no400_k24.g1 CHROMAT_FILE:
MSMg01no400_k24.g1 PHD_FILE: MSMg01no400_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:05 2005
         (381 letters)



>mm_chr3_139509100_139509880
          Length = 781

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatgatgtgatgaatgtaactcagatacttaccttatttaaaatcctttcacagattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ataatgatgtgatgaatgtaactcagatacttaccttatttaaaatcctttcacagattc 522

                                                                       
Query: 61  catttgttatcaaagagagcttcatactacacagtcagcacttttcatgatttgacctgg 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 521 catttgttatcaaagagagcttcatactacacagtcagcacttttcgtgatttgacctgg 462

                                                                       
Query: 121 gtttctctcctctgtcgtgcaggcgtcacctcaccccccgtttacttatggccaccacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtttctctcctctgtcgtgcaggcgtcacctcaccccccgtttacttatggccaccacag 402

                                                                       
Query: 181 aaacattgccctattggcggcatcctccttagacccagctgtgcacactgaagcacagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaacattgccctattggcggcatcctccttagacccagctgtgcacactgaagcacagag 342

                                                                       
Query: 241 ataggcactttctctaaaggacagtgttggcttggaaatgctgaattctaagttctgacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ataggcactttctctaaaggacagtgttggcttggaaatgctgaattctaagttctgacc 282

                                                                       
Query: 301 caatattcagacaaacctgccaatacgaatgtggctacagcttgaaatggtaactgtggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caatattcagacaaacctgccaatacgaatgtggctacagcttgaaatggtaactgtggt 222

                                
Query: 361 tcacggacatgcactggagat 381
           |||||||||||||||||||||
Sbjct: 221 tcacggacatgcactggagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)