BAC Information

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BAC

Clone NameMSMg01-400N04
Chromosome3 (Build37)
Map Location 143,659,967 - 143,847,563
singlet/doubletdoublet
Overlap geneLOC100039952
Upstream geneLOC100039883, 1700001N15Rik, EG668889, EG621809, LOC100039938
Downstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400N04.T7 (MSMg01no400_n04.b1)MSMg01-400N04.TJ (MSMg01no400_n04.g1)
ACCAG500353AG500354
length801787
length of high quality
(start - end)		487 (44 - 530)442 (72 - 513)
definitionCHROMAT_FILE: MSMg01no400_n04.b1 PHD_FILE: MSMg01no400_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:15 2005CHROMAT_FILE: MSMg01no400_n04.g1 PHD_FILE: MSMg01no400_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,847,202 - 143,847,563)(143,659,967 - 143,660,408)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTTGATGTTCCATAGAGCGCAGTAAGTGCGTTCTAACACTCACA
GTAAACAAGTATGCATGTGGTCTCACCGGCCTTAAAGGGCAGTCAGTCCT
CTTATTCTCTATCAGTTTTATGTGATAGGTAGGCTTGGTTGTTTTGTAGG
CTGGGTAAGATAAGGTTTTTGCTCTTTAGCCCAGGCTGACCCCAAACTCA
TGTGGCTTCTCCCACCTTGGCCTCTGACATGCTGGGATCACAGGTGTGTG
GTACCATGTACCGTGCCTGCCTTGCATTATCTCAGTTTTATAGATGAGTA
ATTTAAGGTTCCAAGAGGTCACTAAATAAGCATGCAAAGTAAGGGAGTAC
TCCCTGGAAGGCTAAGATGTCAGAGTGTGTACAATGTCCTCAGTAATCAG
TGTTTTTTTTTTATAGCACTTCTTACATATGAAATTAATATTACAACTCC
ATAATGAACAGACTGTCACCACTTTATGTCAAGCGGAGGATCAGGTGCTA
CAGAGATAGTTCCAGTGATTAAGAGCACTTTCCGCTTTTTCATAGAACCT
GATTTCTGTTTCCCTTACCCTCTCTGGGTCTGCCCCCAATCCTTTTGTCA
TTTTAGTCCTCCCTTCTGGTCTCTGGGCTCTCGTTTGTTTAACCAAATGT
GCCCTGCACTCTTCTATAGTCACATTTTCGCAACCTAATTCCTTTCTTAA
ATTCCCTTTGGTCTTTGACATATCTGTTACCCACTTTTTTCTTTTATCGC
N

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCCCTCCAGTGTCTGCTGCCTTCCCCGC
TCCTGTGATGGGCAGTGTTCTGGTACAATTGGCTTTGGCAGTCAGGGCTG
GGATTCCAACAATAACAGCGTGGTACCCCTTCCTCAATCGTATACTTCTC
ATACTACAGACCATCAGTAAAAAAGAAACATAAGCAAGTCACCCCGGAGC
CTTGCAAACTCATAGGGTAGATGGGCTTCTAAGATACAGAGTTACAGTGA
TTCCTATTAGAAGGCCCCATTTGCTCGCTGGGTGCTTTCTAGAATTAAGA
GGTCTGTGGTGGTATGGTCTCTTCTTAGCTGGGCCATCATTAAGGCATTT
GTAAGTTGGAAGACACTTTTGGGGACGAGGGAGATGTTGTTGGAGTGCTT
GCCCTACAAGCACAAAGACCTGAGCTTATTCTACAAAATCCAAAGCTTAG
TACAGTGTGTGCTTGGGATCCCAGCACTGGGAAAGCAGAGGCAGGGGCAT
TCCTGGAGATCACTGGGTAGCTATCATCTTCAAATGGGAGTTTCAAGTTC
AGCAACAAAGTTTATGGACGCCAAACAAGACACCAGAAGTTCAAGAACCA
GACCACAGGGGCGCTGTTGCCTTCGGGAGCTGGCTCTACCCACATTTTGG
AAAAACCCATACGCTTAATCTTCAAGTGGGATATGGTCACCGTTGAAAAA
AACCTCCATTCCTCTGTAATTTAGGGACTTTCTGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_n04.b1 MSMg01no400_n04.b1 CHROMAT_FILE:
MSMg01no400_n04.b1 PHD_FILE: MSMg01no400_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:15 2005
         (487 letters)



>mm_chr3_143847202_143848088
          Length = 887

 Score =  661 bits (342), Expect = 0.0
 Identities = 357/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctcttgatgttccatagagcgcagtaagtgcgttctaacactcacagtaaaca 64
           |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 362 gaattctctcttgatgctgcatagagcgcagtaagtgcgttctaacattcacagtaaaca 303

                                                                       
Query: 65  agtatgcatgtggtctcaccggccttaaagggcagtcagtcctcttattctctatcagtt 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 302 agtatgcatgtggtctcaccggccttaaagggcagtcagtcctcttattcactatcagtt 243

                                                                       
Query: 125 ttatgtgataggtaggcttggttgttttgtaggctgggtaagataaggtttttgctcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttatgtgataggtaggcttggttgttttgtaggctgggtaagataaggtttttgctcttt 183

                                                                       
Query: 185 agcccaggctgaccccaaactcatgtggcttctcccaccttggcctctgacatgctggga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 agcccaggctgaccccaaactcatgtggcttctcccaccttggcctctgacatgctggga 123

                                                                       
Query: 245 tcacaggtgtgtggtaccatgtaccgtgcctgccttgcattatctcagttttatagatga 304
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 122 tcacaggtgtgtggtaccatgtaccgtgcctgccttgcattaactcagttttatagatga 63

                                                                       
Query: 305 gtaatttaaggttccaagaggtcactaaataagcatgcaaagtaagggagtactccctgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gtaatttaaggttccaagaggtcactaaataagcatgcaaagtaagggagtactccctgg 3

             
Query: 365 aa 366
           ||
Sbjct: 2   aa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_n04.g1 MSMg01no400_n04.g1 CHROMAT_FILE:
MSMg01no400_n04.g1 PHD_FILE: MSMg01no400_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:15 2005
         (442 letters)



>mm_chr3_143659767_143660608
          Length = 842

 Score =  785 bits (406), Expect = 0.0
 Identities = 433/442 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccctccagtgtctgctgccttccccgctcctgtgatgggcagtgttctggtacaattg 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccctccagtgtccgctgccttccccgctcctgtgatgggcagtgttctggtacaattg 260

                                                                       
Query: 61  gctttggcagtcagggctgggattccaacaataacagcgtggtaccccttcctcaatcgt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gctttggcagtcagggctgggattccaataataacagcgtggtaccccttcctcaatcgt 320

                                                                       
Query: 121 atacttctcatactacagaccatcagtaaaaaagaaacataagcaagtcaccccggagcc 180
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 321 atacttctcatactacagaccatcagtaaaaaagaaacataagcaactcaccccagagcc 380

                                                                       
Query: 181 ttgcaaactcatagggtagatgggcttctaagatacagagttacagtgattcctattaga 240
           ||||||||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct: 381 ttgcaaactcacagggtagataggcttctaagataccgagttacagtgattccaattaga 440

                                                                       
Query: 241 aggccccatttgctcgctgggtgctttctagaattaagaggtctgtggtggtatggtctc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtccccatttgctcgctgggtgctttctagaattaagaggtctgtggtggtatggtctc 500

                                                                       
Query: 301 ttcttagctgggccatcattaaggcatttgtaagttggaagacacttttggggacgaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttagctgggccatcattaaggcatttgtaagttggaagacacttttggggacgaggg 560

                                                                       
Query: 361 agatgttgttggagtgcttgccctacaagcacaaagacctgagcttattctacaaaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgttgttggagtgcttgccctacaagcacaaagacctgagcttattctacaaaatcc 620

                                 
Query: 421 aaagcttagtacagtgtgtgct 442
           ||||||||||||||||||||||
Sbjct: 621 aaagcttagtacagtgtgtgct 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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