Query= MSMg01no401_d06.b1 MSMg01no401_d06.b1 CHROMAT_FILE:
MSMg01no401_d06.b1 PHD_FILE: MSMg01no401_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:46 2005
(556 letters)
>mm_chr3_52800505_52801460
Length = 956
Score = 1023 bits (529), Expect = 0.0
Identities = 546/552 (98%)
Strand = Plus / Minus
Query: 5 gaattcctttcttcctctcaggaagtcccaccttccactcctgcccaggagtggcgatca 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gaattcctttctccctctcaggaagtcccaccttccactcctgcccaggagtggcgatca 879
Query: 65 aatgttaaagccaatcagagaatgccttaggtaggtgagaatgaacagagacacaatttc 124
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 878 aatgttaaagccaatcagagaatgccttaggtaggtgaggatggacagagacacaatttc 819
Query: 125 acacagtgtacctcaacatttgagacaatggatcttagcaaaaaatattaaaattaaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acacagtgtacctcaacatttgagacaatggatcttagcaaaaaatattaaaattaaaat 759
Query: 185 ttctttcagaatatcagtgaacaaaatatgtaagcatacttttctccttgcaaaaatgag 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tcctttcagaatatcagtgaacaaaatatgtaagcatacttttctccttgcaaaaatgag 699
Query: 245 aaatctctttggatggatctaagaatcatctttttaatagaaaattggaaattaccaaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaatctctttggatggatctaagaatcatctttttaatagaaaattggaaattaccaaat 639
Query: 305 atgctgatgtaattaattatttcaaaatagcagatattcacggttagtctaaatatactg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atgctgatgtaattaattatttcaaaatagcagatattcacggttagtctaaatatactg 579
Query: 365 gtctctaagcagctgtaaagaattgagtaactatagtttttagctatgttgttaatagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gtctctaagcagctgtaaagaattgagtaactatagtttttagctatgttgttaatagga 519
Query: 425 taagctagttttaatgaaaagaactaagtattacacaatctaattatctagtcactaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 taagctagttttaatgaaaagaactaagtattacacaatctaattatctagtcactaaga 459
Query: 485 gctattaattgtctttcttaaaattaaaaccagactttgctatgtaatgaanatgcatgt 544
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 458 gctattaattgtctttcttaaaattaaaaccagactttgctatctaatgaaaatgcatgt 399
Query: 545 gttgtgctgggg 556
||||||||||||
Sbjct: 398 gttgtgctgggg 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_d06.g1 MSMg01no401_d06.g1 CHROMAT_FILE:
MSMg01no401_d06.g1 PHD_FILE: MSMg01no401_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:46 2005
(544 letters)
>mm_chr3_52697691_52698634
Length = 944
Score = 975 bits (504), Expect = 0.0
Identities = 533/546 (97%), Gaps = 9/546 (1%)
Strand = Plus / Plus
Query: 1 tgtgtaattaccagtagagggaacaaactatgaaatccaattattccagttaagaaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaattaccagtagagggaacaaactatgaaatccaattattccagttaagaaatgc 260
Query: 61 taattgttaaaaatcaaagaaatatacctgtctcgggggatggggggattcattcattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgttaaaaatcaaagaaatatacctgtctcgggggatggggggattcattcattca 320
Query: 121 ttcattcattca--ttcattcactttttttttttgaggcaaagtctcatacatcttaggc 178
|||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcattcattcacttt--tt---tttttttttttgaggcaaagtctcatacatcttaggc 375
Query: 179 tagtctccaactcacattgaaggtgaggctgccattgaactcctgatcaactctcttctc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tagtctccaactcacattgaaggtgaggctgccattgaactcctgatcaactctcttctc 435
Query: 239 taccccctgtttgctaggattgcaggcatgcaccaccatgagcagtttggattatgagac 298
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taccccctggttgctaggattgcaggcatgcaccaccatgagcagtttggattatgagac 495
Query: 299 tcttgataaaacacctgaatgaaggggaggcctgaggcagtctaggtaagaccccccctc 358
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 496 tcttgataaaccacctgaatgaaggggaggcctgaggcagtctaggtaagaccccc--tc 553
Query: 359 accaggagtagatgacactatgctggagccagccttgcctgtcacttagcaaagcttcct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 accaggagtagatgacactatgctggagccagccttgcctgtcacttagcaaagcttcct 613
Query: 419 cggattccatgacaagggactttgaaagcagcttctaccagatggaggaacccagggaga 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 614 cggattccatgacaagggactttgaaagcagcttctaccagatggaggaacccaaggaga 673
Query: 479 cactgtaatccagggctgggtttttatgttcaaccctctttctacagaggccggaaactg 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cactgtaatccaggactgggtttttatgttcaaccctctttctacagaggccggaaactg 733
Query: 539 tatgat 544
||||||
Sbjct: 734 tatgat 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
