BAC Information

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BAC

Clone NameMSMg01-401G08
Chromosome3 (Build37)
Map Location 51,501,579 - 51,673,006
singlet/doubletdoublet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401G08.T7 (MSMg01no401_g08.b1)MSMg01-401G08.TJ (MSMg01no401_g08.g1)
ACCAG500792AG500793
length765749
length of high quality
(start - end)
455 (75 - 529)273 (327 - 599)
definitionCHROMAT_FILE: MSMg01no401_g08.b1 PHD_FILE: MSMg01no401_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:01 2005CHROMAT_FILE: MSMg01no401_g08.g1 PHD_FILE: MSMg01no401_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,672,557 - 51,673,006)(51,501,579 - 51,501,851)
sequence
CCCCTCCATATTTGCGGTCGCTAAANGAATCACTATTCCAAGACGATCCG
CGGAATTCCTTGTTTACCAAAGGACATTTTGAGNAAACAGTGGAATAAAA
ATATCCCTGGGCCCTGGAAGGGGAAGCTCTCTGAAGTGTCTCTCCTCCCA
CCTCGTCCTTCCCAGAAAACAAACAGAGAACCCAGGGCTTGGCCACGGCT
TGCTATACATTGGCCGTCCTCGCTGGTAGGAATCTCCAGCTGGGAATGAC
ACAGATCATAGCAAATCTTTTCATCTGTTCACTTCCTTCCGAGTGATTCT
TTCTCCTTCCTCACCTCCCTTTTTTGTTTCTTTACAGCTATAAATAAAAT
CCCATTAGAAAAATCAGAAAATAACACAGGGTCATGTCTACAGATGCGTT
TGAAGAGAAAATGTATACATGACTCCTAGTAAGAACTACTGGGAGAAGAC
CCCTGAGGATACTGTTTCTTGCGGTTTAAAAAGGAAACACAATGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCCCCCCCCCTCCCTCC
CTTTCCTCCCCCCCTTTTCTCCTTTCTCCCTTCTCCTTCCTTTTCCTTCC
TTCTTTCCTTCCTCCTTCTCCTTCTTCTCTTCACCCTCTCCTTTTCCCTC
TCTCCTTCCCCCTCTTCTTTTTTTCTTTCCCCCCCTTTTTTTTTTCCCTC
CTTCCTTCCCTTCTCCCTTTTCTCTTACCCTTTCATTTTTTCTCCCCCCC
CCCCCTCCTCCCTCT
NNGGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAACAAAAATCTTTAGCCTTTCTATACATTTTTT
TCCTTCTTCTATGTTCCTAAGAACGGCAGGGCTATGAGTACCTTGACAGG
GACAATGGTGACTTTCTCACCAATAGGAAATACCAATAAGTGCTTGCTGA
ATTGATGGCTTCTACCTTGGGGAATGGTACTTACCTGCTCAGCCAGGATC
TGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGCTGTTGCTGCTG
CTGCCTCTGCTCCCGAATTAATTGNTGCTTCTGGTGCTCCATCAGCTGGG
CCCGTTGATCCATCAGCATCTGCTTCATGATGGCTGCCTGTGGCTGGCTG
CCTAGAAATCCAAGGCCCCCAGGACTGGCTCCGGAGACCATGCTGCCCGA
CCCTGAGGGCACAGAGTTCTGCATAGGGCCCGTGGTCCGGGGAATACCAA
CTGCGTGCTGCTCCTAGAGGGAACAGAAGAAAGCAGTTTAGAAATTCTGC
TGGACCACTTCCTGACATTTCAGGGGAAACTTCTGAGGAAGGGAATGAGG
TAGAGGTCCTAGCCTGGGGATTCCAGGGGTCCAGAGTGGTGCCGGGTACC
CCTCCTTATAACCATCCTGTTGGCCTTGCCCAATAATAACTGGAGAGGCT
CCTGGGCCAAGCAATACAAACAAAAAATGGGCCCTGCGACATGCGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_g08.b1 MSMg01no401_g08.b1 CHROMAT_FILE:
MSMg01no401_g08.b1 PHD_FILE: MSMg01no401_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:01 2005
         (455 letters)



>mm_chr3_51672389_51673243
          Length = 855

 Score =  849 bits (439), Expect = 0.0
 Identities = 447/450 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttgagnaaacagtggaataaaaatatccctgggccctggaaggggaagctctctga 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cattttgagtaaacagtggaataaaaatatccctgggccctggaaggggaagctctctga 559

                                                                       
Query: 61  agtgtctctcctcccacctcgtccttcccagaaaacaaacagagaacccagggcttggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agtgtctctcctcccacctcgtccttcccagaaaacaaacagagaacccagggcttggcc 499

                                                                       
Query: 121 acggcttgctatacattggccgtcctcgctggtaggaatctccagctgggaatgacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acggcttgctatacattggccgtcctcgctggtaggaatctccagctgggaatgacacag 439

                                                                       
Query: 181 atcatagcaaatcttttcatctgttcacttccttccgagtgattctttctccttcctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcatagcaaatcttttcatctgttcacttccttccgagtgattctttctccttcctcac 379

                                                                       
Query: 241 ctcccttttttgtttctttacagctataaataaaatcccattagaaaaatcagaaaataa 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctccctcctttgtttctttacagctataaataaaatcccattagaaaaatcagaaaataa 319

                                                                       
Query: 301 cacagggtcatgtctacagatgcgtttgaagagaaaatgtatacatgactcctagtaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cacagggtcatgtctacagatgcgtttgaagagaaaatgtatacatgactcctagtaaga 259

                                                                       
Query: 361 actactgggagaagacccctgaggatactgtttcttgcggtttaaaaaggaaacacaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actactgggagaagacccctgaggatactgtttcttgcggtttaaaaaggaaacacaatg 199

                                         
Query: 421 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 450
           ||||||||||||||||||||||||||||||
Sbjct: 198 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no401_g08.g1 MSMg01no401_g08.g1 CHROMAT_FILE:
MSMg01no401_g08.g1 PHD_FILE: MSMg01no401_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:01 2005
         (273 letters)



>mm_chr3_51501379_51502051
          Length = 673

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttctggtgctccatcagctgggcccgttgatccatcagcatctgcttcatgatggctg 60
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 201 gcttctggtgctccatcagctgggcccgttggtccattagcatctgcttcatgatggctg 260

                                                                       
Query: 61  cctgtggctggctgcctagaaatccaaggcccccaggactggctccggagaccatgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtggctggctgcctagaaatccaaggcccccaggactggctccggagaccatgctgc 320

                                                                       
Query: 121 ccgaccctgagggcacagagttctgcatagggcccgtggtccggggaataccaactgcgt 180
           ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 321 ccgaccccgagggcacagagttctgcatagggcctgtggtccggggaataccgactgcgt 380

                                                                       
Query: 181 gctgctcctagagggaacagaagaaagcagtttagaaattctgctggaccacttcctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgctcctagagggaacagaagaaagcagtttagaaattctgctggaccacttcctgac 440

                                            
Query: 241 atttcaggggaaacttctgaggaagggaatgag 273
           |||||||||||||||||||||||||||||||||
Sbjct: 441 atttcaggggaaacttctgaggaagggaatgag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)