Query= MSMg01no401_g17.b1 MSMg01no401_g17.b1 CHROMAT_FILE:
MSMg01no401_g17.b1 PHD_FILE: MSMg01no401_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:02 2005
(500 letters)
>mm_chr3_27992206_27993105
Length = 900
Score = 743 bits (384), Expect = 0.0
Identities = 482/536 (89%), Gaps = 36/536 (6%)
Strand = Plus / Plus
Query: 1 ctcccaccctctcctctgccatagaaagccaagatgactttgagtttctgaccctccctc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 165 ctcccaccctctcctctgccatagaaagccaagatgactttgcgtttctgaccctccctc 224
Query: 61 catcccctacctccagagtgctgagatttcaggggtgtgatgttactgccagtttatgtg 120
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 225 catcccctccctccagagtgctgagatttcaggggtgtgatgttagtgccagtttatgtg 284
Query: 121 gttctggggacagagcccagggctctgcacagcaggcagtcattactgactgagttacgg 180
||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 285 gttctagggacagagcccagggctgtgcacagcaggcagtcatttctgactgagttatgg 344
Query: 181 tatcagcactcttaagtgaggttttagagcacagtgtatttaataacatagcagaggact 240
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 345 tatcagcacgcttaagtgaggttttagagcacagtgtatttaataacagagcagaggact 404
Query: 241 cttcttatttgtttttaagcactatgatatcaactacgaagaggtcggttctctggtcaa 300
||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 405 cttcttacttgtaaataagcactatgatatcaactacgaagaggtcggttctccggtcaa 464
Query: 301 gccctgctgcatact----gtca------------------ca--t------------tt 324
||||||||||||||| |||| || | ||
Sbjct: 465 gccctgctgcatactagctgtcaaccttggggaaactgcttcacctctctgcacacagtt 524
Query: 325 ttcttcttttataaatcagagctaataatactgtctacccactccacagggccagtaatg 384
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 525 ttcttcttttataaatcagagctaataatactgtctacccactcaacagggccagtaatg 584
Query: 385 gacagcaatgggtagagatgctaattcatgcaaagcactaaaaaggccagggggctctgt 444
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gacagcgatgggtagagacgctaattcatgcaaagcactaaaaaggccagggggctctgt 644
Query: 445 atagttccgtggacacagtgctgacctagcactcattgaggtctgggttttatcca 500
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 645 atagttccgtggacacagtgctgacttagcactcattgaggtctgggttttatcca 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_g17.g1 MSMg01no401_g17.g1 CHROMAT_FILE:
MSMg01no401_g17.g1 PHD_FILE: MSMg01no401_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:02 2005
(514 letters)
>mm_chr3_28144480_28145393
Length = 914
Score = 746 bits (386), Expect = 0.0
Identities = 419/432 (96%), Gaps = 5/432 (1%)
Strand = Plus / Minus
Query: 87 tctgtaagattgtctagaatgaacgcttctcctttccacaagaggactcaaccagaaggt 146
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 914 tctgtaagattgtctagaatgatcgcttctcctttccacaagaggactcaaccagaaggt 855
Query: 147 gccattatgaggaacaagctctcacaggacactgaatttttctgtactttgcctttgaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gccattatgaggaacaagctctcacaggacactgaatttttctgtactttgcctttgaac 795
Query: 207 tctctagaactaataagagatcaatttatgatgtttctaaccctctcttggttgggcat- 265
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 794 tctctagaactaataagagatcaatttatgatgtttctaacccac-cttggttgggcatt 736
Query: 266 ---tgtgatctggcagcttgactctaatagctcatccaaagcagttcagccttctaagaa 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gtgtgtgatctggcagcttgactctaatagctcatccaaagcagttcagccttctaagaa 676
Query: 323 ggttaaagctcccagcttctcagcagttggactccaccagatgtcagcttatgaaagcag 382
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct: 675 ggttaaagctcccagcttctcagcagttggactccactagacgtcagcttatgtaagcag 616
Query: 383 cactaagaacgtggagcattggtgggttgaccccacagtatcctctgtccatagatggtt 442
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 615 cactaagaacgtggagcattggtggattgaccccacagtatcctctgtccatagatggtt 556
Query: 443 agagacaggaaaatgtcaggagcacacttcatagggatcttccttggtaaatctcccaaa 502
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 555 agagacaggaaaatgtcaggagcacacttcataggaatcttccttgttaaatctcccaaa 496
Query: 503 caaatggcccag 514
||||||||||||
Sbjct: 495 caaatggcccag 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
