Query= MSMg01no401_g19.b1 MSMg01no401_g19.b1 CHROMAT_FILE:
MSMg01no401_g19.b1 PHD_FILE: MSMg01no401_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
(554 letters)
>mm_chr3_24154245_24155196
Length = 952
Score = 379 bits (196), Expect = e-109
Identities = 211/216 (97%), Gaps = 2/216 (0%)
Strand = Plus / Minus
Query: 339 ccataccatatagaattcacttacattatattgagccatagaattatcttttacaactaa 398
||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 752 ccataccatatagtattcacttaaattatattgagccatagaattatctattacaactaa 693
Query: 399 caaaaagtaaagcattataaaatacaaaagtaaagagaaaagagcttctttagaaatgtt 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caaaaagtaaagcattataaaatacaaaagtaaagagaaaagagcttctttagaaatgtt 633
Query: 459 tgggagaagtgatcttcccagaaagaatcacaatcattggtgagccctgaacacatacac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgggagaagtgatcttcccagaaagaatcacaatcattggtgagccctgaacacatacac 573
Query: 519 gttgagtattttttatgttattggagcatgatatat 554
| |||||| |||||||||||||||||||||||||||
Sbjct: 572 g-tgagta-tttttatgttattggagcatgatatat 539
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 952
Length adjustment: 10
Effective length of query: 544
Effective length of database: 942
Effective search space: 512448
Effective search space used: 512448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_g19.g1 MSMg01no401_g19.g1 CHROMAT_FILE:
MSMg01no401_g19.g1 PHD_FILE: MSMg01no401_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
(529 letters)
>mm_chr3_23979491_23980418
Length = 928
Score = 992 bits (513), Expect = 0.0
Identities = 525/529 (99%), Gaps = 1/529 (0%)
Strand = Plus / Plus
Query: 1 caaaggtatttactgatggaatgttatttattttggcaactacaagttctctatggaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggtatttactgatggaatgttatttattttggcaactacaagttctctatggaaga 260
Query: 61 agtagagggctggaggttttactgagttacagagcatttgcagggcactagtaacaaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagagggctggaggttttactgagttacagagcatttgcagggcactagtaacaaagc 320
Query: 121 tttgctcaagagacagtatggcttcataaacaatcagctctcttgtgtgactagcagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctcaagagacagtatggcttcataaacaatcagctctcttgtgtgactagcagtga 380
Query: 181 tacccactggaaagaaaatatccatgcagaaacacttggaaagattaagtgaaaaagcta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tacccactggaaagaaaatatccatgcagaaacacttggaaagattaagtgacaaagcta 440
Query: 241 ctgcttggtcctttaaaaaaagaagaaaagggatcacagaaacatttagcagaagctagt 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcttggcccattaaaaaaagaagaaaagggatcacagaaacatttagcagaagctagt 500
Query: 301 tttaggaaaaaattaaaacatcttactttttgttacttttgagagaggagctctgacttc 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tttaggaaaaaattaaaacatcttacttttt-ttacttttgagagaggagctctgacttc 559
Query: 361 tcctgatgataatagtttgacttataacgaagaaagcacaagacctcaaccttcacaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcctgatgataatagtttgacttataacgaagaaagcacaagacctcaaccttcacaaaa 619
Query: 421 tatggtgagttattcattacagaacttacaaagtactaaatggagtgcagttgagaacag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatggtgagttattcattacagaacttacaaagtactaaatggagtgcagttgagaacag 679
Query: 481 attactggcatttctagattgatgctagcttccagataatcctacttat 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attactggcatttctagattgatgctagcttccagataatcctacttat 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
