BAC Information

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BAC

Clone NameMSMg01-401P15
Chromosome3 (Build37)
Map Location 17,591,895 - 17,592,349
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P15.T7 (MSMg01no401_p15.b1)MSMg01-401P15.TJ (MSMg01no401_p15.g1)
ACCAG501234AG501235
length729744
length of high quality
(start - end)
449 (68 - 516)325 (329 - 653)
definitionCHROMAT_FILE: MSMg01no401_p15.b1 PHD_FILE: MSMg01no401_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:44 2005CHROMAT_FILE: MSMg01no401_p15.g1 PHD_FILE: MSMg01no401_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATCATAATTGCGGCGCTATACGATCACATTTTCAAACGACCGNGGAAT
CCAGAATTACAAAATAACACCTGAAGAAAAGATTAGTAAATTGGTGGATT
AGATCCTGTATGAAACAAAAAAAAACTGAGTTTGAGAACAAATATAAGAA
TCTTTGCCAGTCTTTTCATTTGTGAATTTAACTCAATGAAAGAAGGTGTG
CCTTGTAAAACAAAGCCCTGGTTTCAGAACCTGGCACTAAAAAGATATTA
TTTTCACTAAAGAGAGTTGTTGAAAGCAAAAAGAAAATAATTACCATGAT
ATATTAAAGTTTAAATCATTTTAAAAGCACAAGAAGCCAATGTGGTGGCA
CAAATCTTTAATCTTTTTCCCCATTTTTTATTAGATATTTTCTTTATTTA
CATTTCAAATGTTATCTGGAAAGTACCCTATACCCTCCCCCTCCCCCCGC
CCTACCCACCTACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGTAT
CATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCTAACCTTAAATCTTA
ACACACATGATGCAATCATAGGCGTTTCCAAGAGTTCGGTGCAAGCTTGA
TCTTCTTCCGTCTATAATGGACAACCCTATTTCATTTCCTAATTTTTTTT
TTTTTTTTCATATCTCTATAAGTCTGCGATTTCACTATTGTAAATGCCTT
ATCCCTATTCTCCATCTCCCGTATTCCTN
NCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCAAAAAAATTCTCACCCGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAAGCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGACGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCAGTTCCTCTGATAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAG
AAGGACACACGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAAAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTTAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGAAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTATCCCATAACCTAGGATACCCAAGACATAAGATACCATTTT
GCTAAACACATGTAACTCATGAAGAATGATGACTGAAGTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p15.b1 MSMg01no401_p15.b1 CHROMAT_FILE:
MSMg01no401_p15.b1 PHD_FILE: MSMg01no401_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:44 2005
         (449 letters)



>mm_chr3_17591695_17592549
          Length = 855

 Score =  745 bits (385), Expect = 0.0
 Identities = 436/455 (95%), Gaps = 6/455 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctgaagaaaag-attagtaaattggtggattagatcctgtatgaaacaaaaaaaaa- 58
           |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| 
Sbjct: 201 cacctgaagaaaagtattagtaaattggtggattagatcctgtaggaaaaaaaaaaaaaa 260

                                                                       
Query: 59  ---ctgagtttgagaacaaatataagaatctttgccagtcttttcatttgtgaatttaac 115
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaactgagtttgagaacaaatataagaatctttgccagtcttttcatttgtgaatttaac 320

                                                                       
Query: 116 tcaatgaaagaaggtgtgccttgtaaaacaaagccctggtttcagaacctggcactaaaa 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaatgaaagaaggtgtgccttgtaaaacaaagccctggtttcagaacctggcactaaaa 380

                                                                       
Query: 176 agatattattttcactaaagagagttgttgaaagcaaaaagaaaataattaccatgatat 235
           |||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agataaaattttcgctaaagagagttgttgaaagcaaaaagaaaataattaccatgatat 440

                                                                       
Query: 236 attaaagtttaaatc-attttaaaagcacaagaagccaatgtggtggcacaaatctttaa 294
           |||||||   ||||  ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 attaaaggcaaaatatattttaaaagcacaagaagccaatgtggtggcacaaacctttaa 500

                                                                       
Query: 295 tctttttccccattttttattagatattttctttatttacatttcaaatgttatctggaa 354
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tctttttccccattttttattagatattttctttatttacatttcaaatgctatctggaa 560

                                                                       
Query: 355 agtaccctataccctccccctccccccgccctacccacctactcccacttcttggccctg 414
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcccctataccctccccctccccccgccctacccacctactcccacttcttggccctg 620

                                              
Query: 415 gcattcccctgtactgtatcatataaagtttgcaa 449
           ||||||||||||||||||||| |||||||||||||
Sbjct: 621 gcattcccctgtactgtatcacataaagtttgcaa 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 855
Length adjustment: 10
Effective length of query: 439
Effective length of database: 845
Effective search space:   370955
Effective search space used:   370955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)