Query= MSMg01no402_g21.b1 MSMg01no402_g21.b1 CHROMAT_FILE:
MSMg01no402_g21.b1 PHD_FILE: MSMg01no402_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
(245 letters)
>mm_chr3_41431657_41432302
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 ctgcctctccatcctaaatgttgagattaaaagcaccacacctgactttccctctaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgcctctccatcctaaatgttgagattaaaagcaccacacctgactttccctctaattt 387
Query: 61 taaaaggttaaaaatccatacaaata-tcagcactaaaatatgaacaaaactgtgctcag 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 386 taaaaggttaaaaatccatacaaatactcagcactaaaatatgaacaaaactgtgctcag 327
Query: 120 ataggaaaaatgttgcaaatattaagagaaatagagtgaatctaatatgcaattatttct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ataggaaaaatgttgcaaatattaagagaaatagagtgaatctaatatgcaattatttct 267
Query: 180 gaagcagataatctaagcgtaaaggaaaatagactcggacttttcaactcctaagaggtg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaagcagataatctaagcgtaaaggaaaatagactcggacttttcaactcctaagaggtg 207
Query: 240 tgcaca 245
||||||
Sbjct: 206 tgcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space: 150332
Effective search space used: 150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no402_g21.g1 MSMg01no402_g21.g1 CHROMAT_FILE:
MSMg01no402_g21.g1 PHD_FILE: MSMg01no402_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
(454 letters)
>mm_chr3_41239796_41240649
Length = 854
Score = 847 bits (438), Expect = 0.0
Identities = 450/454 (99%)
Strand = Plus / Plus
Query: 1 ttttctaacagcagagatctagtctcaattatgtttaactgagatgaagcaatatggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctaacagcagagatctagtctcaattatgtttaactgagatgaagcaatatggtgc 260
Query: 61 tctagtgagaaccatggaccagaggacaggacacatgggttaaccccaagctctggttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagtgagaaccatggaccagaggacaggacacatgggttaaccccaagctctggttcc 320
Query: 121 atcattagcacttaatgtagccttaagtgattcagtctctccaaggcccactcaacttat 180
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 321 atcattagcacttaatgtagccttaagtgatccaggctctccaaggcccactcaacttat 380
Query: 181 ctctgaaaagagggaggtccttcatggtctgaagctttctttggctgctttgagacctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctgaaaagagggaggtccttcatggtctgaagctttctttggctgctttgagacctag 440
Query: 241 ctgaacatccattaggttgcaaatactggctttcttgcttgacggtgcctagagagttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaacatccattaggttgcaaatactggctttcttgcttgacggtgcctagagagttgg 500
Query: 301 gagcgtgcctgaactcaagccctgtatcattggctcgcgtctgtacagtgggatccaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagcgtgcctgaactcaagccctgtatcattggctcgcgtctgtacagtgggatccaggg 560
Query: 361 aagaagcccgctgagtcacacagagaacacaccctgaagctgagggctgtgggcaagctg 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaagcacgctgagtcacacagagaacacaccctgaagctgagggctgtgggcaagctg 620
Query: 421 ctcctcactgcatgctgcttcaggtcacacagaa 454
||||||||||||||||||| ||||||||||||||
Sbjct: 621 ctcctcactgcatgctgctccaggtcacacagaa 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
