BAC Information

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BAC

Clone NameMSMg01-402H05
Chromosome3 (Build37)
Map Location 80,415,616 - 80,415,817
singlet/doubletsinglet
Overlap genenone
Upstream geneEtfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H05.T7 (MSMg01no402_h05.b1)MSMg01-402H05.TJ (MSMg01no402_h05.g1)
ACCAG501595AG501596
length791761
length of high quality
(start - end)
226 (84 - 309)435 (69 - 503)
definitionCHROMAT_FILE: MSMg01no402_h05.b1 PHD_FILE: MSMg01no402_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:20 2005CHROMAT_FILE: MSMg01no402_h05.g1 PHD_FILE: MSMg01no402_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAATCCGCGGAANCNN
CAAGCTTAACATCAAAAATCCGAGGAACNANGNAAAAACACCAATGCCAG
GNATATTTGTATATAACCCTAACCCACTGATTTCTGGTGGCTGAGACAAA
AGAACAGAAAGACCAGCTTGGACTACACCAGGAGATACTGCTTCAATAAA
TGAAATCTTTCTAGAGGGAGTGTTTTTTTCCGAGGAGAAACCAGTATTCA
GGCTACCATTTGAAATGTAAATAAAGAAAATATCCTGTTCCGGGACTCCA
CTGAACTTATGATTTTATTTTGAACAGGCGAGAGGGCGCGCCAGAGAATC
AGACAGCTTCTGGGTCAGGCTGAAGCACAGAGTTGCTGACGCAGCACCCT
TGGTGGTTCATAGACAGCGGTCACCGTCCAGACCAGAGGAGAGGTGTTCG
CCTGGCTAGGGAGGTGGTCTCAGTCTCAGGAGCAGTAGTCGCCATCTTGG
CTCCTGGACTCCATGTAATTAAAAATCTTACCTGCCTATGTTATAGTCTG
CACCACATAATTTTGAAGCTTCCCGTTACCTGCCTAAATAATACCAAGCT
TCCTGGGAAAGTTCCTGGGTTTGGCCTCTATTTCTTCGGCTCAGGAGGCA
CGCCCCTACCCCTTATATTTTTCGGCACACTCTTTTTCTTGTTACAAAGC
TTTTGTCTTTTTAACGTATTGTGTTGCACCCCTCGGTACTCTTCATAAGG
AAGACTATATCCCGTCTCCCCCTACTCTCTTTTCTCTAAAN
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGGATCTGCTAATGAAAGACATGCACACAT
TACCTCATTGTTGAAATGTCTTGGCTAGCTCAAATGCCAGGCAGTTCTAA
TGCTCTGCCTGGCTATCATAGTATTCCCTCCAGTACTCCCGACTCAACAC
TCTAAATCTGCCATCTATTTTTGCTACCCTGTTCCTTCTGAACCACTCCC
TAACCTAGGCTTTGCTGCCCAAGACACTTCTGGGCAGCCCTTTCAGGGGC
TGCATTCATTCCTCTTCTACATTCCCAATGATTCTCCTTCTGAAGCTCTA
TATCAGGTCTATCTCCCTCTGAAACATGGCAATCCTTCTGTCCCCTCCTC
TCTCCTGTGTTCTAGCCCGTGAAAATCTTAGGGTCCCACCCCATCTCCAT
TTGCACATCTGTTGACAACTGGCTTCTTGTCTGTTCAATAAAAAAACCAA
TTGGTGAGAAGGACCTTCAGTGTTTGTCCACTCATATTCCCGATTAAATC
AAAGCATTAAAATCAATCCCAAGCATTTGACTTGGTTGTTTATTTTCTTA
GCTTTTTAAAAAAAATCTTTTTATTTTCTGCTTCGTTGCCACCATTTCAC
AAATATGGCCTCCCCAGATGGCGCTCAACATTTAAACATTAAATATCTAT
CCTGCCACACATTCTAAAATTACCGTGCTATACGTGCCAAATTCCTTCTG
TCCTAAGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h05.b1 MSMg01no402_h05.b1 CHROMAT_FILE:
MSMg01no402_h05.b1 PHD_FILE: MSMg01no402_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:20 2005
         (226 letters)



>mm_chr3_80415477_80416101
          Length = 625

 Score =  302 bits (156), Expect = 1e-86
 Identities = 191/203 (94%), Gaps = 2/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaacaccaatgccaggnatatttgtatataaccctaacccactgatttctggtggctg 60
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 341 aaaaacaccaatgccaggtatatttgtata-aaccctaacccactgatttctggtggctg 283

                                                                       
Query: 61  agacaaaagaacagaaagaccagcttggactacaccaggagatactgcttcaataaatga 120
           ||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct: 282 agacaaaagaacagacagaccagcctggactataccaggagatactggttcaataaatga 223

                                                                       
Query: 121 aatctttctagagggagtg-tttttttccgaggagaaaccagtattcaggctaccatttg 179
           ||||||||||||||||||| |||||||| ||||||||||||| |  | ||||||||||||
Sbjct: 222 aatctttctagagggagtgttttttttcagaggagaaaccaggaaacgggctaccatttg 163

                                  
Query: 180 aaatgtaaataaagaaaatatcc 202
           |||||||||||||||||||||||
Sbjct: 162 aaatgtaaataaagaaaatatcc 140


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 625
Length adjustment: 9
Effective length of query: 217
Effective length of database: 616
Effective search space:   133672
Effective search space used:   133672
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)