BAC Information

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BAC

Clone NameMSMg01-402I15
Chromosome3 (Build37)
Map Location 134,273,982 - 134,274,307
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402I15.T7 (MSMg01no402_i15.b1)MSMg01-402I15.TJ (MSMg01no402_i15.g1)
ACCAG501662AG501663
length701710
length of high quality
(start - end)
326 (78 - 403)529 (79 - 607)
definitionCHROMAT_FILE: MSMg01no402_i15.b1 PHD_FILE: MSMg01no402_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:28 2005CHROMAT_FILE: MSMg01no402_i15.g1 PHD_FILE: MSMg01no402_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTGTGATCTCGAAATGAACTTCTAATGGTGTGTGTG
TGTGTTGAATGTGAATATATCCAGGAAATGATGACATATTAAAGTTGCTG
GGAAACTGAAGTCTCAATCATACCTGGAAAGCAGGTTTGGTGACACTAAC
AAAATCCTCAGCAGCAACATCAAAGCCCAGAGGAGTGCCCTCGGGGTGAC
CTGGGAATGCCTGCTTGCTTCTTCCTCTAAGAAGAGAGTCAATCTGTTGC
TTGAAGGAAAGAAAAGTCTGCTTTGTTTACTACATGGTTATGCGAATTTA
TTCTTTTCCTTTCCGTGAATTGTAGCAATTTCTGTTGCAGTTTGGAGTTA
GAATCACACGAAGAAAGGTTGAGACTCCTCAGAAGTGTGTTGCATCACCA
TTAAATCCTTCCAGTTGAATTTGGTTGACAAGGGGTAAATATTCCCCCAA
ATGAAAAATCCAGGATTTCCGGGGCTTTTGGTTCCTAAAAAACCCATTGT
AAAAATCCCCCCTCTCTCCCCCAAAAATGGAATTTCTGGGAACTTTCCTT
ACAAGGGTCAAGAACATTTTTTTTTTCCCCCCCCAATTTCCCCCCTCAAT
ATTAACCCTTCTTTTTTTGGAAAAATTTTTTTTTTTTTTTCAAACTAAAA
G
CTTCTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTTGTGTGATTCTTGTTC
CTTTACTTAGGCTTTTTTACTTCTGTTGGTTTGTTATGTGTTGTGTCTGG
CCAGCAGATCACAGCCTGGGTTCTAGCCTGGAAAGGCATTCTGGAAACCT
GGAAGAGAAGAGGGGCTAGGCGGTGAGAGAAAGAAATGCAGCTAAGACAG
GCATTCTGATCAAAACTCAATTTTACTATTCCGCATGCAGTTATGAAGCA
GGGGAAGGGGGCCTGATTTTTTTCAAATAATCTCGGGATCCAGTAGCAGG
GTGACCACGTGTATGGCTCCAAACAGCAAAGAGGCAGGTTCCAGCAGTGG
GCATGGCAGAATGATTGAGCGGGGGAAGCTCCACCCCTGAGCAAGCAGGT
TTCAGGCTGGGGGAGGGGAGACTACAGTTATGTCTAACTTCAATGTAATA
TTTTTTGTTTTATCTTATTATATTTTCCAAAAATATTATTTCTAAGAAGC
CTGTTCTTATCTAATGAGAGACAGAAAAGGAGTATATCTGGAGAGAGGAA
GGTTGGGACAATGACCTTTAAGGAATAGAGAGAGGGCAAACCTTGACAGG
ATATATTATGCGAGGAAAGAAGCTATTTTAAATAACAGAAAAAAGATATT
TAAAATCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_i15.b1 MSMg01no402_i15.b1 CHROMAT_FILE:
MSMg01no402_i15.b1 PHD_FILE: MSMg01no402_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:28 2005
         (326 letters)



>mm_chr3_134273782_134274507
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaacttctaatggtgtgtgtgtgtgttgaatgtgaatatatccaggaaatgatgacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 atgaacttctaatggtgtgtgtgtgtgttgaatgtgaatatatccaggaaatgatgacat 467

                                                                       
Query: 61  attaaagttgctgggaaactgaagtctcaatcatacctggaaagcaggtttggtgacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attaaagttgctgggaaactgaagtctcaatcatacctggaaagcaggtttggtgacact 407

                                                                       
Query: 121 aacaaaatcctcagcagcaacatcaaagcccagaggagtgccctcggggtgacctgggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aacaaaatcctcagcagcaacatcaaagcccagaggagtgccctcggggtgacctgggaa 347

                                                                       
Query: 181 tgcctgcttgcttcttcctctaagaagagagtcaatctgttgcttgaaggaaagaaaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgcctgcttgcttcttcctctaagaagagagtcaatctgttgcttgaaggaaagaaaagt 287

                                                                       
Query: 241 ctgctttgtttactacatggttatgcgaatttattcttttcctttccgtgaattgtagca 300
           ||||||||   ||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 286 ctgctttgaaaactacatggttgtgcgaatttattctcttcctttccgtgaattgtagca 227

                                     
Query: 301 atttctgttgcagtttggagttagaa 326
           ||||||| ||||||||||||||||||
Sbjct: 226 atttctgatgcagtttggagttagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)