BAC Information

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BAC

Clone NameMSMg01-402J02
Chromosome3 (Build37)
Map Location 73,212,136 - 73,212,661
singlet/doubletsinglet
Overlap genenone
Upstream gene2010204N08Rik, Slitrk3
Downstream geneBche, LOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402J02.T7 (MSMg01no402_j02.b1)MSMg01-402J02.TJ (MSMg01no402_j02.g1)
ACCAG501684AG501685
length591743
length of high quality
(start - end)
121 (74 - 194)536 (65 - 600)
definitionCHROMAT_FILE: MSMg01no402_j02.b1 PHD_FILE: MSMg01no402_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:30 2005CHROMAT_FILE: MSMg01no402_j02.g1 PHD_FILE: MSMg01no402_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCCCCCTCCTTCCCCCTCCCCCNTTXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTTAGGATACTCCCT
CCCCACCTTCCATGCCAATGAGTTCCAGGCTCTTTCCCATTTTCTCTTCT
ACTAGAGTCAGTGTAACTGGTTTTATGTTAAGTTCCTTGATAAACTTGGA
CTTGAGCTTTGTTCAAGGTGACAAATATGGGATCTATTTTTTATTTTTTT
CTACTTGGCAGAATTTTCCCAGTTAAAACCAAGCCACCCCCTTTTAATTT
GAAAAAAAGGCCTTTCCCCTTTTTTTTTTCCCCCCCCCCGGGGAAAAAAA
TTTTTTTTGGGGCCCTCCCCCCGGTCTTTTTTGGGGGGGAAAAAAAAGAA
AAAACCCCAATTTTTTTGGGCCCCCGGGGTTTAAAAATTTTGGTGGGGAG
GAAAAAAAAAAAAAAATATCCCCCTCCCCAAAAGGGGGGGGTTCCCTCTC
CCCACAAAAAAAGGGGGGAATACCCCCCCCCACATAACACAAAAACCATT
CTTTCCTCCCAAAAAAAAAAAAGGTGGGGACAAAAAAAATA
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCGCGAATTCTTTTGCAAAAAAAAAATTCTTAGA
GCTTATAAAATGTCTTCCTGTCCATCAAGTTCATGCAGATATATATATAT
ATATATATATTGCCTTTGTTCTGGTTTGAACATGAAATGCTCTTTCCAGG
CTTATATATTGAAACCTTATCCTGATGGCCTTGTTTTGTTTTAAGAGTTT
GATAGAATCGCAGTAAAGAAAGTAGGTCACAGGGCTGCCTCTGGTTTGTC
TAGGGTTCTTCCTTTGAGTTTTCTATTTACTGTTCACATGAGATAAACAG
CCTCTAATTCTACATATCCTTGTGCCTTGATATCAAAATGGGCACAGAGA
AATAGATCCAACTGATCATACACTAAACCATGGGCAACTTGAAAAAAGTA
AATAAGACTTCCTTTATGCTATTGTCTTAAGTATTCTGGTGACCATAATT
AATATATCCCTTGTGTCACTAGTGTTTCATAGACAAACATGAAAGCCAGT
AATATCTGTTAGACACAGTGTGATTTATATTTATTTTGTTTAGTTGAATG
TTTTCACAGTGCAAGAAACACATTTTCTTTATGTCACTCAGGTCTTTTTT
GCAATTTCATTTTGTATGGAAAAAACTATTCCTCCACCCATTTCCTTAAC
ATTATGACTTTCTTTAAAACTAGGACATTGCTTTGCAAGAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_j02.g1 MSMg01no402_j02.g1 CHROMAT_FILE:
MSMg01no402_j02.g1 PHD_FILE: MSMg01no402_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:30 2005
         (536 letters)



>mm_chr3_73211840_73212775
          Length = 936

 Score =  963 bits (498), Expect = 0.0
 Identities = 521/530 (98%), Gaps = 4/530 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttttgcaaaaaaaaaattcttagagcttataaaatgtcttcctgtccatcaagt 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattcttttgcaaaaaaaaaattcttagagcttataaaatgtcttcctgtccatcaagt 763

                                                                       
Query: 67  tcatgcagatatatatatatatatatatattgcctttgttctggtttgaacatgaaatgc 126
           ||||||||||   | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tcatgcagat---t-taaatatatatatattgcctttgttctggtttgaacatgaaatgc 707

                                                                       
Query: 127 tctttccaggcttatatattgaaaccttatcctgatggccttgttttgttttaagagttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tctttccaggcttatatattgaaaccttatcctgatggccttgttttgttttaagagttt 647

                                                                       
Query: 187 gatagaatcgcagtaaagaaagtaggtcacagggctgcctctggtttgtctagggttctt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 646 gatagaatcgcagtaaagaaagtaggtcacagggctgcctctggtttgtcttgggttctt 587

                                                                       
Query: 247 cctttgagttttctatttactgttcacatgagataaacagcctctaattctacatatcct 306
           |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 586 cctttgagttttctgtttactgttcacatgagatgaacagcctctaattctaaatatcct 527

                                                                       
Query: 307 tgtgccttgatatcaaaatgggcacagagaaatagatccaactgatcatacactaaacca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tgtgccttgatatcaaaatgggcacagagaaatagatccaactgatcatacactaaacca 467

                                                                       
Query: 367 tgggcaacttgaaaaaagtaaataagacttcctttatgctattgtcttaagtattctggt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgggcaacttgaaaaaagtaaataagacttcctttatgctattgtcttaagtattctggt 407

                                                                       
Query: 427 gaccataattaatatatcccttgtgtcactagtgtttcatagacaaacatgaaagccagt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaccataattaatatatcccttgtgtcactagtgtttcatagacaaacatgaaagccagt 347

                                                             
Query: 487 aatatctgttagacacagtgtgatttatatttattttgtttagttgaatg 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aatatctgttagacacagtgtgatttatatttattttgtttagttgaatg 297


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)