BAC Information

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BAC

Clone NameMSMg01-403B12
Chromosome3 (Build37)
Map Location 80,508,726 - 80,573,543
singlet/doubletdoublet
Overlap geneGria2
Upstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGlrb, EG626841, Pdgfc, LOC229443
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403B12.T7 (MSMg01no403_b12.b1)MSMg01-403B12.TJ (MSMg01no403_b12.g1)
ACCAG502086AG502087
length761762
length of high quality
(start - end)		526 (44 - 569)521 (73 - 593)
definitionCHROMAT_FILE: MSMg01no403_b12.b1 PHD_FILE: MSMg01no403_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:15 2005CHROMAT_FILE: MSMg01no403_b12.g1 PHD_FILE: MSMg01no403_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,573,021 - 80,573,543)(80,508,726 - 80,509,246)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACTGATAAGTTGAATAAACAATGTTCATTATTGAGTCTAAAATTGC
TTTTATGCTATTTGTATATATTTGAAAGTTAGCTGTTGTAAAAATGTATG
TTTGTTTTTGCATGTAAACCAATCCTCTAGATGTTCAGAGAAAGAACACT
TGAGTCATTTTAGTGGGAACTAACCATTACTACCAGCTAAAAATAGTAGC
TTATTCTATTTTCTTCCGACAATGAGCACCCTTTGATACTGAAAATAATG
TGTCTTGGGACCATGATTTTTGTTTTCTCCTAAATAAGTGCCCAAAGTTT
AAGAGACACTCAAGAACTGTGATCTCATAGGCCAGCCATCTCTGAGTTGT
TTAATAGACTTTGATTTCACTCTACTTGGCTTTACCATAGCTATGTGAAG
GAAGTAGATAATATTGTAAAGAATGATTTCAAGTAAAGACTGGCCCAGCA
GTTCTTCTGGGGTCCAATCTGGCACCTAAGAATCTTTGTAGTTACTGCTT
CATTCCAACACAAATTCATCCGCAAGGACAAATCCAAGGAGTCTGTGAAA
TCAAAATGTCAAGTAATGGAGGTGGGAGGTGAATTGTTCTTCCCCAATAG
AGAGAGACACTTCCCCATACTATAATCCCCCACCCCCTATAGCAGTGGTT
ACCCTAGGTTAAAACGAAATTGCAATTTTTCCTCCTGGATGCCCGGATGT
TGAAAAGGGAC

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTAAATCATCCTAGACTGTAATTCAAA
TATGTTCTTTCAACATCCTTAATGGAGGTCCATAGTAGACTTTACTTGAA
AAGGGATGATTGCTGCACTTTCAAAAATAATTAAAAGGAGTTTCTAAGTG
GTCTGTTAATTTTTAGCTCTTTTAAAAAGAGACTAACCCACTCTACTGTT
CTGATCTGCAGTGGTCATTACTGCATTCCAAAATATGATAGTTGTGTTCA
TTCTTTTCTTAAAATGGTTATTAAACTGGCAATATTATGTTTTAGTTATA
ATTTTTAAATATATATGGTGCATAAGCAGAAAGAAAAATACATTTTATTT
TTAATGGTATATACTATATTTACATGTTGATTAAAAAAATCAATATTAAG
GAAAATACCTTAACTAAAAACCTGTGTTTCTTTCTAAGAAATAAGTGTTA
TTGTATGTGCAATATAGCAAGCCTTGTCTCAAGAATGAAAGCACAGAAGA
AAATATTCTACTTAAGAAACAAGCTTGATAAAAATGAAAAATTGTCTGAA
TATATATATATATATATATATATATATATATATATATATGAGAGAGNCGC
CCTTTTTTTTTCCCTTTTCCTCCCTCTCTTTACCGCTCCTATCCTCTTTC
TCCCCTCTCCCTTCCCCTTTTTTTTCTCCCCCTTTACCCCCTTTTCCCCT
CTCTCTTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_b12.b1 MSMg01no403_b12.b1 CHROMAT_FILE:
MSMg01no403_b12.b1 PHD_FILE: MSMg01no403_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:15 2005
         (526 letters)



>mm_chr3_80572818_80573743
          Length = 926

 Score =  957 bits (495), Expect = 0.0
 Identities = 516/523 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaactgataagttgaataaacaatgttcattattgagtctaaaattgcttttat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ggaattcaactgataagttgaataaacaatgttcattattgagtctaaaattgcttttat 667

                                                                       
Query: 64  gctatttgtatatatttgaaagttagctgttgtaaaaatgtatgtttgtttttgcatgta 123
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 666 gctatttgtatacatttgaaagtgagctgttgtaaaaatgtatgtttgtttttgcatgta 607

                                                                       
Query: 124 aaccaatcctctagatgttcagagaaagaacacttgagtcattttagtgggaactaacca 183
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 606 aaccaatcctctagatgttcagagaaagaacacttgagtcattttaatgggaactaacca 547

                                                                       
Query: 184 ttactaccagctaaaaatagtagcttattctattttcttccgacaatgagcaccctttga 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 ttactaccagctaaaaatagtagcttattctattttcttccgacaatgagcatcctttga 487

                                                                       
Query: 244 tactgaaaataatgtgtcttgggaccatgatttttgttttctcctaaataagtgcccaaa 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 486 tactgaaaataatgtgtcttgggaccatgatttttgttttctcccaaataagtgcccaaa 427

                                                                       
Query: 304 gtttaagagacactcaagaactgtgatctcataggccagccatctctgagttgtttaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtttaagagacactcaagaactgtgatctcataggccagccatctctgagttgtttaata 367

                                                                       
Query: 364 gactttgatttcactctacttggctttaccatagctatgtgaaggaagtagataatattg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gactttgatttcactctacttggctttaccatagctatgtgaaggaagtagataatattg 307

                                                                       
Query: 424 taaagaatgatttcaagtaaagactggcccagcagttcttctggggtccaatctggcacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taaagaatgatttcaagtaaagactggcccagcagttcttctggggtccaatctggcacc 247

                                                      
Query: 484 taagaatctttgtagttactgcttcattccaacacaaattcat 526
           |||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 246 taagcatctttgtagctactgcttcattccaacacaaattcat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_b12.g1 MSMg01no403_b12.g1 CHROMAT_FILE:
MSMg01no403_b12.g1 PHD_FILE: MSMg01no403_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:15 2005
         (521 letters)



>mm_chr3_80508526_80509446
          Length = 921

 Score =  969 bits (501), Expect = 0.0
 Identities = 516/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaatcatcctagactgtaattcaaatatgttctttcaacatccttaatggaggtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaatcatcctagactgtaattcaaatatgttctttcaacatccttaatggaggtcca 260

                                                                       
Query: 61  tagtagactttacttgaaaagggatgattgctgcactttcaaaaataattaaaaggagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtagactttacttgaaaagggatgattgctgcactttcaaaaataattaaaaggagtt 320

                                                                       
Query: 121 tctaagtggtctgttaatttttagctcttttaaaaagagactaacccactctactgttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaagtggtctgttaatttttagctcttttaaaaagagactaacccactctactgttct 380

                                                                       
Query: 181 gatctgcagtggtcattactgcattccaaaatatgatagttgtgttcattcttttcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatctgcagtggtcattactgcattccaaaatatgatagttgtgttcattcttttcttaa 440

                                                                       
Query: 241 aatggttattaaactggcaatattatgttttagttataatttttaaatatatatggtgca 300
           |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggtcattaaactggcaatatcatgttttagttataatttttaaatatatatggtgca 500

                                                                       
Query: 301 taagcagaaagaaaaatacattttatttttaatggtatatactatatttacatgttgatt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 taagcagaaagaaaaatacattttatttttaatggtatatactatatttacatgttaatt 560

                                                                       
Query: 361 aaaaaaatcaatattaaggaaaataccttaactaaaaacctgtgtttctttctaagaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaaaaatcaatattaaggaaaataccttaactaaaaacctgtgtttctttctaagaaat 620

                                                                       
Query: 421 aagtgttattgtatgtgcaatatagcaagccttgtctcaagaatgaaagcacagaagaaa 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtgttattgtatgtgcaatgtagcaagccttgtctcaagaatgaaagcacagaagaaa 680

                                                    
Query: 481 atattctacttaagaaacaagcttgataaaaatgaaaaatt 521
           ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 atattcttcttaagaaacaagcttgataaaaatgaaaaatt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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