BAC Information

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BAC

Clone NameMSMg01-403J11
Chromosome3 (Build37)
Map Location 77,965,046 - 77,965,499
singlet/doubletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526, LOC626479
Downstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403J11.T7 (MSMg01no403_j11.b1)MSMg01-403J11.TJ (MSMg01no403_j11.g1)
ACCAG502466AG502467
length746762
length of high quality
(start - end)
460 (40 - 499)239 (71 - 309)
definitionCHROMAT_FILE: MSMg01no403_j11.b1 PHD_FILE: MSMg01no403_j11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:56 2005CHROMAT_FILE: MSMg01no403_j11.g1 PHD_FILE: MSMg01no403_j11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTTGCGGTCGCTAAAAGACTCACTTTCAAAAGAGGATCCGCGGAATT
CTCTTTACCCAAAGTCAACCTTTTATCTTAAATTGATCACCTCAGGTATT
ATGCTCGCATAATGAAAAGCCAATCAACAGTGAAAAAGATTAATTTTTGT
CAAAATCAGTATGGTGTTTAAATAAAGGTGGTTTAAACTCTTAAATAATG
TATTTTAAAATTTTATAATAGTTGTGAAATGATAAAAATGATGAGCTTAT
TTTGAAATTAAAGCTGAAAAACTGGTAACAGGGTTGAATGAAAAAAGATT
CTTCAATATAAATGTTATTAGTAACAAATGAAGTTCAGTCTGGGGGCTTT
GTGGGGCCTGTTTTACAGTGGCTGCAGACGGCAGCCTCCTTCACAGTGTG
TATAGCCTGCTGCTTTATGGAGGTCTACAGGGGACTTTGGAGACAGCTTT
CCATAAAACCTCCTGTCTACAGGCTCATGTAGTGTCCAGTCCTTACCACA
GACAGCTACACACTGGGCCTATGGGAAGCCATAGGCACAGTTAATATGTA
TCTTTGGCCAGGTCATTATGTCTCTCCACACCAAAACTGAGAAAAAGAAA
CCTTTGACAGCATAAGAGGCGCAGGTCAATATTCAAGCTACATGGTGATC
ATAACATCCACTTCTCCATAAACGAAGACTTAATGAGGTGATTGTCTATG
AACCTCAAGGTATACCATCCAAAAAGCAGTTCGCTCCAATTAACTG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCTTG
GACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGCTGGTGAGTGGTCCTGG
TTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGTTTTCTCA
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGAT
TTTGTTATTTCCTANCTTCAGGCGTGGGAGACAAGCTCTCTCCTCTGAGT
TTCAGTGCTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTTTCGGGGAAG
GTGCACAGTTATCTGGTGTTTGGACCTCCTCTTGGCTGAAGGTGAATGCC
CTAAACCGGCTTTTCCCAGATGCTGTGTTGCTTTTGGCACCAACGTGCCC
GTTTGTCTCGTATTCGTACACGGCCTCTTCTCCCACGTTTTGTCTTCCTT
CCATAGTTCCCTGTTTGTTCTTTCTGCCCCCCTCCCTGTTTCCTCCCTCC
TCAATCTTCCGCTTTCTTTTCCCCCTTCTTTCCTTGCTTTTTTCTGTTTT
TTTTTTTTCTTCCCCTTTTCCTTTCCCCCCCCTTTCCTCCCCCTCTTTCT
CCTTCCTTTTTTCCCCTCCTCTTTCCCTCCCTATTCTGTTCCTCCTTTTC
CTCTCTCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_j11.b1 MSMg01no403_j11.b1 CHROMAT_FILE:
MSMg01no403_j11.b1 PHD_FILE: MSMg01no403_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:56 2005
         (460 letters)



>mm_chr3_77964665_77965524
          Length = 860

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctttacccaaagtcaaccttttatcttaaattgatcacctcaggtattatgct 66
           |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 835 gaattctcttgagccaaagtcaaccctttatcttaaattgatcacctcaggtattatgct 776

                                                                       
Query: 67  cgcataatgaaaagccaatcaacagtgaaaaagattaatttttgtcaaaatcagtatggt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cgcataatgaaaagccaatcaacagtgaaaaagattaatttttgtcaaaatcagtatggt 716

                                                                       
Query: 127 gtttaaataaaggtggtttaaactcttaaataatgtattttaaaattttataatagttgt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gtttaaataaaggtggtttaaactcttaaataatgtattttaaaattttataatagttgt 656

                                                                       
Query: 187 gaaatgataaaaatgatgagcttattttgaaattaaagctgaaaaactggtaacagggtt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gaaatgataaaaatgatgagcttattttgaaattaaagctgaaaaactggtaacagggtt 596

                                                                       
Query: 247 gaatgaaaaaagattcttcaatataaatgttattagtaacaaatgaagttcagtctgggg 306
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 595 gaatgaaaaaagattcttcaatataaaggttattagtaacaaatgaagttcagtctgggg 536

                                                                       
Query: 307 gctttgtggggcctgttttacagtggctgcagacggcagcctccttcacagtgtgtatag 366
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 535 gctttgtggggcctgttttacagtggctgcagatggcagcctccttcacagtgtgtatag 476

                                                                       
Query: 367 cctgctgctttatggaggtctacaggggactttggagacagctttccataaaacctcctg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cctgctgctttatggaggtctacaggggactttggagacagctttccataaaacctcctg 416

                                             
Query: 427 tctacaggctcatgtagtgtccagtccttaccac 460
           ||||||||||||||||||||||||||||||||||
Sbjct: 415 tctacaggctcatgtagtgtccagtccttaccac 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)