Query= MSMg01no403_l10.b1 MSMg01no403_l10.b1 CHROMAT_FILE:
MSMg01no403_l10.b1 PHD_FILE: MSMg01no403_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:06 2005
(284 letters)
>mm_chr3_127727574_127728255
Length = 682
Score = 528 bits (273), Expect = e-154
Identities = 277/279 (99%), Gaps = 2/279 (0%)
Strand = Plus / Minus
Query: 1 ggcaggctttagaagtccgtatcgtcacatgggagggaatcaacagcaaggctccaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggcaggctttagaagtccgtatcgtcacatgggagggaatcaacagcaaggctccaagaa 418
Query: 61 cttctgttttagttttacacttactttggatgaagccgcaaactttgcaaaccatatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cttctgttttagttttacacttactttggatgaagccgcaaactttgcaaaccatatgag 358
Query: 121 gaatactttctgctggctatttctaatttgatctaattgttctcgacagtcccttatacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaatactttctgctggctatttctaatttgatctaattgttctcgacagtcccttatacc 298
Query: 181 acgttacgcattatgcacattaaagatgggccgtgggtaggagaaaccacgccaatggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acgttacgcattatgcacattaaagatgggccgtgggtaggagaaaccacgccaatggga 238
Query: 241 atagaaaacaaaaaaaggcgcggggggggggggaggttt 279
|||||||||||||||||||| |||||||||||||||||
Sbjct: 237 atagaaaacaaaaaaaggcg--gggggggggggaggttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space: 185075
Effective search space used: 185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no403_l10.g1 MSMg01no403_l10.g1 CHROMAT_FILE:
MSMg01no403_l10.g1 PHD_FILE: MSMg01no403_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:06 2005
(350 letters)
>mm_chr3_127552745_127553494
Length = 750
Score = 543 bits (281), Expect = e-159
Identities = 338/375 (90%), Gaps = 30/375 (8%)
Strand = Plus / Plus
Query: 1 agtgagggttgcttacctgtgcatggatgaggggttatctacaggcgcacagacaattta 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agtgagggttgcttacctgtgcatggatgaggggttatctactggcgcacagacaattta 260
Query: 61 ctagggactcttatcacgagacaagtatgatatcctctcccctggcaaccataaagttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctagggactcttatcacgagacaagtatgatatcctctcccctggcaaccataaagttcc 320
Query: 121 tcatgagagcctcccttatccactacaaagttctgaagagcccagtctcggtggggatcc 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgagcgcctcccttatccactacaaagttctgaagagcccagtctcggtggggatcc 380
Query: 181 acagctcctgtgtgttcaaaagtgcaataaccatgtcatattcatttcatagcaacccag 240
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 acagctcctgtgtgttcacaagtgcaatgaccatgtcatattcatttcatagcaacccag 440
Query: 241 ttttatctcttctctttctcttctgtaatgctcactgggccctg---------------- 284
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttagctcttctctttctcttctgtaatgctcactgggccctgtaatgctcactgggcc 500
Query: 285 ---gaggggacggtatcgatgttttttttttttaaagattt------atttatttattta 335
|||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 501 ctggaggggacggtatcgatgtttttttttttt-----ttttttaagatttatttattta 555
Query: 336 tttattatatgtaag 350
|||||||||||||||
Sbjct: 556 tttattatatgtaag 570
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space: 252681
Effective search space used: 252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
