BAC Information

Click to search

BAC

Clone NameMSMg01-403N03
Chromosome3 (Build37)
Map Location 125,513,925 - 125,514,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668820, Ndst4
Downstream geneUgt8a, Arsj, Camk2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403N03.T7 (MSMg01no403_n03.b1)MSMg01-403N03.TJ (MSMg01no403_n03.g1)
ACCAG502640AG502641
length763744
length of high quality
(start - end)
595 (43 - 637)354 (75 - 428)
definitionCHROMAT_FILE: MSMg01no403_n03.b1 PHD_FILE: MSMg01no403_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:15 2005CHROMAT_FILE: MSMg01no403_n03.g1 PHD_FILE: MSMg01no403_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTATACTGATACTAAAGAGATAACTAGAACTAATACTTCTCAGACTGTT
TTATATAACAAAAAATGAAGGGACATTTCCACATTATTTTTATAAAGCCA
GTATCACTCTGAAACAAAAATCTGACATAGATCCACATAAAAAAGAAAAT
ATAGGTCAATCTTGCTGCTGAACATGATGCTAAGCCCTCCAAGACAATAT
ACTTGCAAAATAAATTCAAGAGCACATCAATAAATTATAAAATAAACAAA
TAGGCATCATTCAAGGGGTTGCTCAGCATACAAACATTTTAAGTATATTC
CAGCAAATAATCCCATAGCCAACACCTTTTTAAATGAGAAAAAAATTTAG
ATCATTTTTATTGAAATCAAGAAAAAAGGGATGTGAAATCTACCCCTTAT
GTCTACTCAATAGAAAATTTAAAGTCTTAGCTAGATCAATAAGATAAATG
GTAAGGAAGATAGAAATAGGAAAGGAAGAAACCACAATAGCCTTATTTTT
AGATATGGCTTTCAACAGAAAGGGCCTAAACACTCCACTAGAAGACCACA
GTTTTTAAATATATTCAGGGAAGTAGCAGAATACNAAATTAACACGCAAT
AGTTGGGATCCTTTCTATAGCTAAATAATAAACATATTGAGAATTTAATC
GGGAACCATATGTTTCAATCTGCGAAAAAAATGTGTTTCCTTTTAGAAAA
CCCATAGAGGGCC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAAAGAAAACTGCAGAAGAGGTAA
TGGAATTAAATTAAATATAAGATAATTAAAATTAATAGATTTCCAATCCC
ACCTTGGTTTAGAATCAGACCAAGAAACATGAATTCAGGCTGCATCTCAT
GGTTTTTGCTGAAAATATTTACTGAGCAAAATAATAAAGGGTATGAGACT
CATTTCACACAGAAAACCTAAGCCACCTGTGATTACTGGTGTCAATGTCC
TGTATAGCCAGTGTCCAGACTATGTATCTATGGGACTCAAGCAATAGTGA
CTAATTTAGATTTTAATTATAGGGGTAATCACAGGCATAGTGGGATTGTC
AATTGAAATGTACAATGAGTAATAATTTAGNNNTATAAGAATGCCNNAAA
GAAAACACCTTAACACTTAAAAGGGTATACCAAAATTTAACTAAAGCTTT
CCCTAGAGGGCGCCAAATTAAACCCCCCTAACAAAAGGGGGGTCCTTCCA
GACGAAAACGTGGTTTTTTTTTTTTTCCCCTTTNNTTTTTTTTAAGAGAA
AAAAAAAACATCCGGGGCTTTGTTGGTGCGCTCCTTATTTTAATATTATG
GGGGCCGGGTTTCTTTTCCCCCCCTTCCTTCACGTGGTGTGGTTACTTTT
ATCCGTCACGCTAACCCAAATTTTTTTTTTCTTCCCGTCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_n03.g1 MSMg01no403_n03.g1 CHROMAT_FILE:
MSMg01no403_n03.g1 PHD_FILE: MSMg01no403_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:15 2005
         (354 letters)



>mm_chr3_125513662_125514415
          Length = 754

 Score =  623 bits (322), Expect = 0.0
 Identities = 343/350 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaaagaaaactgcagaagaggtaatggaattaaattaaatataagataattaaaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttgaaagaaaactgcagaagaggtaatggaattaaattaaatataagataattaaaatta 554

                                                                       
Query: 61  atagatttccaatcccaccttggtttagaatcagaccaagaaacatgaattcaggctgca 120
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 553 atagatttccaaccccaccttggtttagaatcagaccaagaaacatgaattcagactgca 494

                                                                       
Query: 121 tctcatggtttttgctgaaaatatttactgagcaaaataataaagggtatgagactcatt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctcatggttttcgctgaaaatatttactgagcaaaataataaagggtatgagactcatt 434

                                                                       
Query: 181 tcacacagaaaacctaagccacctgtgattactggtgtcaatgtcctgtatagccagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacacagaaaacctaagccacctgtgattactggtgtcaatgtcctgtatagccagtgt 374

                                                                       
Query: 241 ccagactatgtatctatgggactcaagcaatagtgactaatttagattttaattataggg 300
           ||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 373 ccagacggtgtatctatggaactcaagcaacagtgactaatttagattttaattataggg 314

                                                             
Query: 301 gtaatcacaggcatagtgggattgtcaattgaaatgtacaatgagtaata 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtaatcacaggcatagtgggattgtcaattgaaatgtacaatgagtaata 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)