Query= MSMg01no404_a13.b1 MSMg01no404_a13.b1 CHROMAT_FILE:
MSMg01no404_a13.b1 PHD_FILE: MSMg01no404_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:33 2005
(329 letters)
>mm_chr3_154352140_154352868
Length = 729
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Minus
Query: 1 aacaacataaaataagcacgaaaagtaatgaactcagagcactgatagctgaataaaata 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 377 aacaacataaaataagcacgaaaagtaatgaactcagagcactgatagctgaatgaaata 318
Query: 61 aaatgtcaacacaggatatgagggaggaatttagtaatttcataaagacatagaaatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaatgtcaacacaggatatgagggaggaatttagtaatttcataaagacatagaaatcct 258
Query: 121 ggaaaaattgaaattttgtaaatgaaacaaggagaggaggcaattaagccttaccagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggaaaaattgaaattttgtaaatgaaacaaggagaggaggcaattaagccttaccagtta 198
Query: 181 ccaatagagtggattgagtggaagaaaggacatcagggcttaaagataaagtagacaaat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ccaatagagtagattgagtggaagaaaggacatcagggcttaaagataaagtagacaaat 138
Query: 241 ttgattggttgataaatagatgatagatagatagatagatagatagatagatagatagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttgattggttgataaatagatgatagatagatagatagatagatagatagatagatagat 78
Query: 301 agataga 307
|||||||
Sbjct: 77 agataga 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_a13.g1 MSMg01no404_a13.g1 CHROMAT_FILE:
MSMg01no404_a13.g1 PHD_FILE: MSMg01no404_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:33 2005
(301 letters)
>mm_chr3_154174152_154174851
Length = 700
Score = 507 bits (262), Expect = e-148
Identities = 292/304 (96%), Gaps = 7/304 (2%)
Strand = Plus / Plus
Query: 1 tttcatcttatggtagatatttaacatttgtcttctgatatctttagtctgttcctcagt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatcttgtggtagatatttaacatttgtcttctgatatctttagtctgttcctcagt 260
Query: 61 tccctggtcgcagggaagggtggccttgggtgttactgtcattaccacctttgtctgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctggtcgcagggaagggtggccttgggtgttactgtcattaccacctttgtctgcac 320
Query: 121 tgctttctgcaaggttttcaggtcat-cctggtttgcagtcagcggaagcatcaggtctg 179
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 321 tgctttctgcaaggttttcaggtcattcctggttcgcagtcagcggaagcatcag-tctg 379
Query: 180 gaaggccttgaaagttatgtaaaacttgcaaactcagatgaaaatattttttttttcca- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 gaaggccttgaaagttatgtaaaacttgcaaactcagatgaaaatattttttt---cccc 436
Query: 239 -aaaggcaaagcagtgaccaagggagactgatgtggctgaattccaagaataataaataa 297
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 437 gaaaggcaaagcagtgaccaggggagactgatgtgggtgaattccaagaataataaataa 496
Query: 298 taag 301
||||
Sbjct: 497 taag 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 700
Length adjustment: 9
Effective length of query: 292
Effective length of database: 691
Effective search space: 201772
Effective search space used: 201772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
