BAC Information

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BAC

Clone NameMSMg01-404P03
Chromosome3 (Build37)
Map Location 67,713,348 - 67,713,874
singlet/doubletsinglet
Overlap geneEG208426
Upstream geneShox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404P03.T7 (MSMg01no404_p03.b1)MSMg01-404P03.TJ (MSMg01no404_p03.g1)
ACCAG503492AG503493
length757747
length of high quality
(start - end)
245 (66 - 310)526 (57 - 582)
definitionCHROMAT_FILE: MSMg01no404_p03.b1 PHD_FILE: MSMg01no404_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:47 2005CHROMAT_FILE: MSMg01no404_p03.g1 PHD_FILE: MSMg01no404_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAATTCTCTAG
TTTTCCCCTGCAGTGGAAAGGAAAAGGAAGAGTGTGGTAGATGAAGACAA
GGGGCCTGGACATTCTGGGAGGCTTCAGCTTGGAGTTAGCTTTACTCTAA
GTGAGAAGTACTGTACACCTTTGATCGACATGTAAGATGTATCACTTAAT
TTAAAAGGATAATCCCAGTGTTGCATAGAACTACATTCTCCAGGGACCAG
GGTAAACAGGGTAGTCCCCTAGGGCATTGTTGCTGTGTCCTACAAGTGTC
TTGGACCAGAGTAGCTTTAGTGGAGGTAATGATAAAGGATTGGATCCTTG
AAAAACGTTCAGCCTAGAGCCAAGAGCACTTTGTGATTTTCGTCCTGATA
CCTTACCCCCATCTAGAATGTTTCACGCTTCTGCCCTGACCTTCTGCATC
ACTGCTTTGTGCTTGACCATGATTGCCCATATTCTGCTGGACCATTCGCA
ACGTTTCTGCTTTCACATACTCCCCCATATATCCATCACCTTTGATTCTC
CTCCCGCACCTATTTTTGCTCCTCACCCCCCGGTTTCCCATTTTCTCATT
GCTTTCTGATATTCCCCCACCCTTTTACCCTTTTTTTTTCACTTTTCTTC
CCCTTTTACAAATTTTTTTTTTCCTCCCCGCAATTTCTTTTCCATCATTT
TCCTCCCCCTCATTTGTCTGGCTTCTCTCTCCACCTTATTTTTTTTTTTT
TTCCCCG
TGAGGCCTGGCGGCCGCCTGGCTCACAAATGGAGGTGAACTATAGAAGTT
TCGCGAAATTCACTCTGTAGATCAAGCTGGCCTTGAACTCAGAAATCTGC
CTGCCTCTGCCTCCCAAGTGCTGGGACTAAAGCAGTACACCACCACGCCC
GGCTTGCCCTTGACATTCTTAGCCCTCTCTGTTCCATCCAGCTTTTCCTC
TCCCAAAGGGGGCTCACAGGAAAACAATTTATTTTATGGAGGATTTTTTG
AGAACTAAGTTAAGTTAGATATAAAGCTCATTAAGAGCTAACCTAGACCA
CAATCAGATCTCATTGCATTAATCATTGTGATTGTAATAATTGTAATGAT
TGAAATAATGTCTTTGGCATATCTCATGTGATAGCTTATTATAGATGTGT
GCCACGTATTTATTCTTTCCTCTTCTCCACCAATCACGTAACATTTCCTA
CAGTGCATCTTGTCCATTACACTATGGCACCATAGGCTCTGAGAAATAGC
TGCTGAATTGTATATATATCAATTTCTATGCCAGCTCATAATAAAGAGTA
ACTAAATTTTACTCCCAATCAACATATCATTTAGTTGACAATTGGTAAAT
AGCCCTTTTTCTTCAATTGTCTTATGTTTTATTGCAACATTAAAAGCCCA
ATGACTTATGGAAAGAATAAATATTAAGGTTACTTACTAGAGATTTAAAA
AAAAATAAGTTTGGAAAGTGGTGGCTGCCGATGCTTTTCTTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_p03.g1 MSMg01no404_p03.g1 CHROMAT_FILE:
MSMg01no404_p03.g1 PHD_FILE: MSMg01no404_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:47 2005
         (526 letters)



>mm_chr3_67713050_67713976
          Length = 927

 Score =  965 bits (499), Expect = 0.0
 Identities = 520/527 (98%), Gaps = 1/527 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcactctgtagatcaagctggccttgaactcagaaatctgcctgcctctgcctccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 825 aattcactctgtagatcaagctggccttgaactcagaaatctgcctgcctctgtctccca 766

                                                                       
Query: 61  agtgctgggactaaagcagtacaccaccacgcccggcttgcccttgacattcttagccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 agtgctgggactaaagcagtacaccaccacgcccggcttgcccttgacattcttagccct 706

                                                                       
Query: 121 ctctgttccatccagcttttcctctcccaaagggggctcacaggaaaacaatttatttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctctgttccatccagcttttcctctcccaaagggggctcacaggaaaacaatttatttta 646

                                                                       
Query: 181 tggagga-ttttttgagaactaagttaagttagatataaagctcattaagagctaaccta 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tggaggatttttttgagaactaagttaagttagatataaagctcattaagagctaaccta 586

                                                                       
Query: 240 gaccacaatcagatctcattgcattaatcattgtgattgtaataattgtaatgattgaaa 299
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaccacaatcagatctcaatgcattaatcattgtgattgtaataattgtaatgattgaaa 526

                                                                       
Query: 300 taatgtctttggcatatctcatgtgatagcttattatagatgtgtgccacgtatttattc 359
           ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 525 taatgtctttggcatatctcatgtgatagcttattatagatgtgtgttatgtatttattc 466

                                                                       
Query: 360 tttcctcttctccaccaatcacgtaacatttcctacagtgcatcttgtccattacactat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttcctcttctccaccaatcacgtaacatttcctacagtgcatcttgtccattacactat 406

                                                                       
Query: 420 ggcaccataggctctgagaaatagctgctgaattgtatatatatcaatttctatgccagc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggcaccataggctctgagaaatagctgctgaattgtatatatatcaatttctatgccagc 346

                                                          
Query: 480 tcataataaagagtaactaaattttactcccaatcaacatatcattt 526
           ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcaaaataaagagtaactaaattttactcccaatcaacatatcattt 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 927
Length adjustment: 10
Effective length of query: 516
Effective length of database: 917
Effective search space:   473172
Effective search space used:   473172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)