BAC Information

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BAC

Clone NameMSMg01-405I02
Chromosome3 (Build37)
Map Location 123,787,085 - 123,894,106
singlet/doubletdoublet
Overlap genenone
Upstream geneSynpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405I02.T7 (MSMg01no405_i02.b1)MSMg01-405I02.TJ (MSMg01no405_i02.g1)
ACCAG503920AG503921
length776731
length of high quality
(start - end)
245 (81 - 325)470 (84 - 553)
definitionCHROMAT_FILE: MSMg01no405_i02.b1 PHD_FILE: MSMg01no405_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:30 2005CHROMAT_FILE: MSMg01no405_i02.g1 PHD_FILE: MSMg01no405_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,787,085 - 123,787,329)(123,893,719 - 123,894,106)
sequence
NGGGTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTATCCAAGAGGA
GGCGCGGAATTCTGTGTGTTACTAAACCATAAAAGTGACTCTCTTTGCAA
TCTGTTGTCTAGAAACTTAGAATATTGTATGGTCAAAAGCAATTTTGTCA
TAAGCAAAAGTTTCACTTCCTGGATTTTTTAAAATATAGAGATAATTAAT
AATATGAAACTTTTCCCATCCAAGGAAATATAAAGTGAAACCAATTCAGG
ATTTCATTTCATCAAGTTCAAATCAATAGCACAAGTGAGAATAAGTGTGG
TTGGCAAAGATACGGGGAAAAGGAATTTTTATTCACTCTTGTAGAATATA
AACCATGCATTTTGAAATCACCACCAAAGGTCATCAAAAAGCAAAATTAC
AACTACAGTCTGACACAGCTGTGACATTCCTGAGTGTGTACTCAATAGGC
TGTAAGTCAGCAGGCCACAGAGGCACTCACACATCCATTGTTAGTGCTTC
ACCATTCACAATAGTCAAGAAATGTTACCAGCTTATGTGTGTGTGTGTGC
GTGTGTGTGTGTGTTTCTTCCGTTTTTCCTTCTTTTTCTTTTTCTATTTA
TCTAATCCTATCCATTATTTCTTTTTTCTTATTTCTACACCCTTTTTTCC
TATCTTCTGTCTATTTCTATTTCCCCCTATTTCTCTTCCTCTTTCTATCT
CTATCCCACAATACTAGTCTTATCATTTATTTTAATATATTATTTTTTTC
TTTCGCACTTCTGTTTTTGACCACTN
CAACACGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCATAGTCCAGGCA
GTCCTTGTACTTGTGATCTTCATGACTGTGTTTCACAAGTAGCTAGGGTT
ATAAAAATGCTTAACCGTGTCTTGCTCCCTTCTTATTTTAACTCTGAAGG
AAATAGAAGAGACTTTGCCACTACTGTGATAAAAGTTTAGAAAGCCACAT
AAGTGTATCAATCAATGCTGAAAGATGCTGTGCATGCTTCCAGGGAAGAA
AAGTAATTATCAGTTACAGCCAGCTGTGATTCTTGTAAGCTGCAATAATG
ACTGCCTGGCAAGCCATGCCTGTTGCTTCAATGATGTAGCATGGAAGTAG
TCAACCACTCCATAATTGAAACCCATCTTGTTACCAGTATCAGCCCAAAT
GCTTATGACTAGACGTGTCTTAGGCTCTGCCAGAGAAACAACTAATCTTA
TTTTTCTAAATGGAAATAGTATTTAACTGACTTCAATGACTTAATGGACA
TACCCAAAGTTTAATGCATATTTTACCCCTCATCTGGGAAGCCTGTGTTT
GTGTTATCGGTTGATTAACACGGATGTTCCCCCCTTGTCCTAGGTATTGG
CGAACAATTATTTACTGCTTATTTTTTAATGTATATGTTTATGCTCCATT
CCTCTTTTTTCATTCCCTTTTTATCTTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_i02.b1 MSMg01no405_i02.b1 CHROMAT_FILE:
MSMg01no405_i02.b1 PHD_FILE: MSMg01no405_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:30 2005
         (245 letters)



>mm_chr3_123786885_123787529
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagtgactctctttgcaatctgttgtctagaaacttagaatattgtatggtcaaaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagtgactctctttgcaatctgttgtctagaaacttagaatattgtatggtcaaaagc 260

                                                                       
Query: 61  aattttgtcataagcaaaagtttcacttcctggattttttaaaatatagagataattaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttgtcataagcaaaagtttcacttcctggattttttaaaatatagagataattaat 320

                                                                       
Query: 121 aatatgaaacttttcccatccaaggaaatataaagtgaaaccaattcaggatttcatttc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtgaaacttttcccatccaaggaaatataaagtgaaaccaattcaggatttcatttc 380

                                                                       
Query: 181 atcaagttcaaatcaatagcacaagtgagaataagtgtggttggcaaagatacggggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaagttcaaatcaatagcacaagtgagaataagtgtggttggcaaagatacggggaaa 440

                
Query: 241 aggaa 245
           |||||
Sbjct: 441 aggaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no405_i02.g1 MSMg01no405_i02.g1 CHROMAT_FILE:
MSMg01no405_i02.g1 PHD_FILE: MSMg01no405_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:31 2005
         (470 letters)



>mm_chr3_123893719_123894588
          Length = 870

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccatagtccaggcagtccttgtacttgtgatcttcatgactgtgtttcacaagtagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 actccatagtccaggcagtccttgtacttgtgatcttcatgactgtgtttcacaagtagc 329

                                                                       
Query: 61  tagggttataaaaatgcttaaccgtgtcttgctcccttcttattttaactctgaaggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tagggttataaaaatgcttaaccgtgtcttgctcccttcttattttaactctgaaggaaa 269

                                                                       
Query: 121 tagaagagactttgccactactgtgataaaagtttagaaagccacataagtgtatcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagaagagactttgccactactgtgataaaagtttagaaagccacataagtgtatcaatc 209

                                                                       
Query: 181 aatgctgaaagatgctgtgcatgcttccagggaagaaaagtaattatcagttacagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aatgctgaaagatgctgtgcatgcttccagggaagaaaagtaattatcagttacagccag 149

                                                                       
Query: 241 ctgtgattcttgtaagctgcaataatgactgcctggcaagccatgcctgttgcttcaatg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ctgtgaatcttgtaagctgcaataatgactgcctggcaagccatgcctgttgcttcaatg 89

                                                                       
Query: 301 atgtagcatggaagtagtcaaccactccataattgaaacccatcttgttaccagtatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  atgtagcatggaagtagtcaaccactccataattgaaacccatcttgttaccagtatcag 29

                                       
Query: 361 cccaaatgcttatgactagacgtgtctt 388
           ||||||||||||||||||||||||||||
Sbjct: 28  cccaaatgcttatgactagacgtgtctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)