BAC Information

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BAC

Clone NameMSMg01-405I14
Chromosome3 (Build37)
Map Location 73,806,575 - 73,806,970
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk3, Bche, LOC667425
Downstream geneLOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405I14.T7 (MSMg01no405_i14.b1)MSMg01-405I14.TJ (MSMg01no405_i14.g1)
ACCAG503944AG503945
length776760
length of high quality
(start - end)
144 (79 - 222)405 (91 - 495)
definitionCHROMAT_FILE: MSMg01no405_i14.b1 PHD_FILE: MSMg01no405_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:33 2005CHROMAT_FILE: MSMg01no405_i14.g1 PHD_FILE: MSMg01no405_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGG
GGGGAATTCATAAACTTGCCAAGAGCAGCTATAGGTAAAGAAAAAAAAAC
AAGAAAAAAAGAAATTAGGTTCAGGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
TCCCTTTTAGGCTTTTTTCACTGTGATAGGCAGTGAAACAGAGTTATAAA
GGGTAGGGGAAACTTATAAACTATCAAAGACTAGGTTCACGGGTCACCTA
AACATTGGATTCGAAAATTACAGATTTTAATGTTCAGAGTCCTTAGTCAT
CAGAGAGATGCAAATCAAAACAACCCTGAGATCCCAGATTACACCAATCA
GAATGGGTAAAATCAAAAATTCAGGTGACAACACGTGGTGGAGAAGATGT
AAAGAAAGGAGCACTCCTCCACTGCTGGTGGGACTGCAAAGTGGGATAAC
AACTTTGGAAATCTTTGGGGAGGCTCCCCAGAAAATTGGATATAGATCTA
TCTGGAAGACCCAGCTATATTACTCTGGGAGAATACCCAAAAAGATGGCT
CGATATGGTACAAGGGTTTGGCGGTTATTCTATGTTGTCAAGAGGGCCCT
ATTTGGGGATGACGAGATGGGGGAGACTAAACACAGATGGCTTCCCCATT
AGAAGAGTGGGGGCCCAGAGAAAGGGTGGCTTAATATACGCGAGGGGGGG
GGGTAGGGCCGGCTGTGTGGGGCGCG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACTAAAACAATGCATAA
AATAAAATTATTTTAAAATAATATAAATTAAAAATAATAGAATATTTTAT
ATGAGTATGATGTTGTGAATGTCTAGTTCCTTTATGTCAGGGCTTTCTAT
TCCAGACTAAAACAAAACATAAAATAAAATTATTTAAAAGTCATATAAAT
TAAAAATAATAGAATATTTTATATTAGTATGGCATTGTGAATGTCTAGTT
CCTTTATATTAGGGCTTTACCATTATCATCTTTTACTTGTGGGCATTTTG
TTGTTGTTGTTGTTCAAATATGTTTGTGGGTACCCCAAAAACATGCAGTC
ATGCAGTATTTGTCTTTTCATTCATCTGCTACAATTTTAACATTTATTTT
ATGGTTCACTTAGCAGTATGGATATTATGTTATTTTCTTCTATCTATGAA
GATATGTTTTAGCACTTAAGAACTTGCTTTGTGTATTTATAATTGCCACA
GCTAGCAATATTCTTCTTCTCTGTTTATTTACTGCCTTTTTTTTCCCAAT
TGTATTTGTCCCTACTTCCTTATGTAATTTACATCCTTCTCTTGAACATT
ACGCTTAAATATATCTTCGTCCCTTTTTTGCTACTCCCCTTTTTCNTCTT
TCTCATTTCTCTTTCCTTTATTCCTCTACATTTTTTTTTGCCCTTTCTTT
TCCTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_i14.g1 MSMg01no405_i14.g1 CHROMAT_FILE:
MSMg01no405_i14.g1 PHD_FILE: MSMg01no405_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:33 2005
         (405 letters)



>mm_chr3_73806375_73807173
          Length = 799

 Score =  688 bits (356), Expect = 0.0
 Identities = 388/402 (96%), Gaps = 6/402 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgcataaaataaaattattttaaaataatataaattaaaaataatagaatattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgcataaaataaaattattttaaaataatataaattaaaaataatagaatattttat 260

                                                                       
Query: 61  atgagtatgatgttgtgaatgtctagttcctttatgtcagggctttctattccagactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagtatgatgttgtgaatgtctagttcctttatgtcagggctttctattccagactaa 320

                                                                       
Query: 121 aacaaaacataaaataaaattatttaaaagtcatataaattaaaaataatagaatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaaacataaaataaaattatttaaaagtcatataaattaaaaataatagaatatttt 380

                                                                       
Query: 181 atattagtatggcattgtgaatgtctagttcctttatattagggctttaccattatcatc 240
           ||||||||||||||||||||||||||||||||||||||||| |||||||      |||||
Sbjct: 381 atattagtatggcattgtgaatgtctagttcctttatattacggcttta------tcatc 434

                                                                       
Query: 241 ttttacttgtgggcattttgttgttgttgttgttcaaatatgtttgtgggtaccccaaaa 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 ttttacttgtgggcattttgttgttgttgttgttcaagtatgtttgtgggtaccccaaaa 494

                                                                       
Query: 301 acatgcagtcatgcagtatttgtcttttcattcatctgctacaattttaacatttatttt 360
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 495 acatgtagtcatgcagtatttgtcttttcattcatctgctataattttaacatttatttt 554

                                                     
Query: 361 atggttcacttagcagtatggatattatgttattttcttcta 402
           |||||||| |||| |||||||||||||||  |||||||||||
Sbjct: 555 atggttcagttagtagtatggatattatgcaattttcttcta 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 799
Length adjustment: 9
Effective length of query: 396
Effective length of database: 790
Effective search space:   312840
Effective search space used:   312840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)