NNAATTTAAAATTTGCGGGCGCTAATAGAANTCCTACTGCGAGAGGATGC
GCGGAATTCTCTGTTTGCCAGGGGNATTGTGAATTCTTTAAGACTATGCC
ACTTTAAATCAGGAGAGATAAAGAATAACAAAGATGTCTCTATCCCAGAT
TTTCTTTAGAAATCCAAAGAGGAGAAGTCCCCGCGCTGTGTAAGAGGGAG
CTGGAGCGTGTTCCCAGCACTGGCCAGAGGTGGGGCAGCAGTGGCTGACT
GTGCAACTGTAACTCAGCAGGTTTTCCTCGGTGATGCTAAGAGAGGGAAG
AGTTCTTTTGATTCCCAATCTTTGTTAACAACTCAGCACTTAATTTTCAG
CCTTTAGTTTGCTTGTGTGTTCCAAAGTATAAAGCATCAAGGACAGAACT
CGGCGCTGCCTTTATAAATCACTGGAGACCGAGTGAGGCTTGCTCTGCTT
AAGCCATGAACTTACCTGAGTTTCTTCATTTCCATCAACAAATCCTGCTT
ATATTTTTGTTCTTCCCATTTTTCAATAACATCTAAGTGCTTTGCTTTTC
TTTCAGACATGTGTTTCTTCAGTCTTTCAACTTGGGTGATTCCTTTGAGC
AGAATGGACCTCTCATTGTTGAGGGAAATAACTAAAGACTGGTCTGCAGC
ATTTATTTTTTTTTCCGCTAGAAACATAAATTTCCGCTCTCTAACTTTTT
CCCGGGAAGGGAGTCTCTCCCCCCAAATTGTTGTAAACCCTTTCGAN

TTCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCCATAAGTAGAGGTGGG
AGAAAGGAGTAGGAGTGAGTAAAATTAATTCTTATTGTAAGTATGGGGTT
CCAACATAGAAGCTATACAGCAAACATGCTTGTGACTATTCATTGGATAC
TTGTTGGAAAAGATCTGGTTGGTGATTTCTGTTTCACTGCTCAATGAGAC
TCTGCAAAGCACCGTATGAGAAGGAATAGCCAGCTATGTGAAACACAATA
AGAAGATGGTGTCTTAGTCAGGTCACTTATTTCTATGAAGAAATTCTATA
AGGAAACATTTAATTGAGAATTGTTTATAGTCAGGTTTTAGTTCGTTATA
GTCATGGCAGGAAACATAGCATCTATGCAAGCAGACATGGCACTAGAGCG
ATAACTTAGAGTTCTGCATCTGTATTCTTGGCCAACAGGAAGAGTGAGTG
ATAGTGGGCTTGGCTTGGGCATCTGAAACCTTCCTATGAGCTTATTGGAG
GGGGTGCATCCATTTTCAATCAAACCACCACATTCTAATCTTTGGGCCAC
ATAGATTTATGCCTATACCATAATACAACACTGCCTTATGTTCAACTTTT
AAAAGTCCCCTACCCAGCCCTATTAGAATCTTCTGCACTGTTTAAAGGCC
CCATTTGTCCACCGTTCTTTTTTATTATCTCGTCTTCTCTCCCTA

Query= MSMg01no405_j13.b1 MSMg01no405_j13.b1 CHROMAT_FILE:
MSMg01no405_j13.b1 PHD_FILE: MSMg01no405_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
         (480 letters)



>mm_chr3_154851064_154851943
          Length = 880

 Score =  882 bits (456), Expect = 0.0
 Identities = 474/480 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtgaattctttaagactatgccactttaaatcaggagagataaagaataacaaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 680 ttgtgaattctttaagactatgccactttaaatcaggagagataaagaataacaaagata 621

                                                                       
Query: 61  tctctatcccagattttctttagaaatccaaagaggagaagtccccgcgctgtgtaagag 120
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 620 tctctatcccagattttctttagaaatccaaagaggagaagcccccacgctgtgtaagag 561

                                                                       
Query: 121 ggagctggagcgtgttcccagcactggccagaggtggggcagcagtggctgactgtgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggagctggagcgtgttcccagcactggccagaggtggggcagcagtggctgactgtgcaa 501

                                                                       
Query: 181 ctgtaactcagcaggttttcctcggtgatgctaagagagggaagagttcttttgattccc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctgtaattcagcaggttttcctcggtgatgctaagagagggaagagttcttttgattccc 441

                                                                       
Query: 241 aatctttgttaacaactcagcacttaattttcagcctttagtttgcttgtgtgttccaaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatctttggtaacaactcagcacttaattttcagcctttagtttgcttgtgtgttccaaa 381

                                                                       
Query: 301 gtataaagcatcaaggacagaactcggcgctgcctttataaatcactggagaccgagtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtataaagcatcaaggacagaactcggcgctgcctttataaatcactggagaccgagtga 321

                                                                       
Query: 361 ggcttgctctgcttaagccatgaacttacctgagtttcttcatttccatcaacaaatcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggcttgctctgcttaagccatgaacttacctgagtttcttcatttccatcaacaaatcct 261

                                                                       
Query: 421 gcttatatttttgttcttcccatttttcaataacatctaagtgctttgcttttctttcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 260 gcttatatttttgttcttcccatttttcaataacatctaagtgctttgcttttttttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_j13.g1 MSMg01no405_j13.g1 CHROMAT_FILE:
MSMg01no405_j13.g1 PHD_FILE: MSMg01no405_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
         (380 letters)



>mm_chr3_154706040_154706819
          Length = 780

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggagtaggagtgagtaaaattaattcttattgtaagtatggggttccaacatagaagc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggagtaggagtgagtgaaattaattcttattgtaagtatggggttccaacatagaagc 260

                                                                       
Query: 61  tatacagcaaacatgcttgtgactattcattggatacttgttggaaaagatctggttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatacagcaaacatgcttgtgactattcattggatacttgttggaaaagatctggttggt 320

                                                                       
Query: 121 gatttctgtttcactgctcaatgagactctgcaaagcaccgtatgagaaggaatagccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttctgtttcactgctcaatgagactctgcaaagcaccgtatgagaaggaatagccag 380

                                                                       
Query: 181 ctatgtgaaacacaataagaagatggtgtcttagtcaggtcacttatttctatgaagaaa 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ctatgtgaaacacaataagaagatggtgtcttagtcagggcacttatttctatgaagaaa 440

                                                                       
Query: 241 ttctataaggaaacatttaattgagaattgtttatagtcaggttttagttcgttatagtc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 441 ttctataaggaaacatttaattgagaattgtttacagtcaggttttagttcattatagtc 500

                                                                       
Query: 301 atggcaggaaacatagcatctatgcaagcagacatggcactagagcgataacttagagtt 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 atggcaggaaacatagcatctatgcaagcagacatggtactagagcgataacttagagtt 560

                               
Query: 361 ctgcatctgtattcttggcc 380
           ||||||||||||||||||||
Sbjct: 561 ctgcatctgtattcttggcc 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)