BAC Information

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BAC

Clone NameMSMg01-405J14
Chromosome3 (Build37)
Map Location 12,024,020 - 12,024,262
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405J14.T7 (MSMg01no405_j14.b1)MSMg01-405J14.TJ (MSMg01no405_j14.g1)
ACCAG503992AG503993
length816780
length of high quality
(start - end)
249 (76 - 324)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no405_j14.b1 PHD_FILE: MSMg01no405_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:38 2005CHROMAT_FILE: MSMg01no405_j14.g1 PHD_FILE: MSMg01no405_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGGTTACTCTAGTACCACATATTATAATAGGGTTATTTG
ATTTTCTGGAGTCCATCTTCTTGAGTTCTTTACATGTATTGGATATTAAC
CCCCTATCAGATTTAAGATTGGAAAAGATATCTTCCCAACCAGCTGGTTG
CCTTTTTGTTTTATTGACAATATCCTTTGCCTTACAGAAGCTTTGAAATT
TTATGAGGTCCCATTTGCTGATTCTCTCCCCCGAACCCTCGTGTGTGTGT
GTGTGTGTGTGTGTTTGGTTTTTTGNTTTTNNNNNNNNNNNNTTNTNNNN
NNNNNTNNNTTTTTTTTCTTTTTCCTCTTTTTTTTTTTTTTTNTTTTCTC
TTTTTTTTCCNTCCTCTTCCCCCTCCCCTCTCTTTTTTCTTTCTTCTTCT
TCCTCTTTTTCCCCCCCCTTCTTCCCTTTTTTTCTTTCCTTTTTTTTCTC
TTTTTCTCTTTCCTCCCTCCCCTCTTCTCTTTTTCCCCTTTTTTTTTCTT
CCCTTTTCTCTCCTTTTCCTTCTCCCTTTTTTTTCTCCTCCTCTTTTTTT
CCTTTCCCTCCTCCCCTTCTTTCCTCTCCTTCTTCTTTTTTCTTCCCCTC
TCTTTTCCTTACCTTTTTCTTTTTCTCTCCCCCTCTCTTCTCCTTTTTCC
TTTTCTTCTTTTCTTTTTTTCCTTCCCCCCTCTTTCCCTCCCTCTCTTTC
CCCCTCCCCCCTCTTTTCTTCCTACTTTTTTTCCCTCTCTCTTCTCCTTT
TTTTCTCTTTCTTCCN
NTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCTTGAGATTTTATCTTC
AGTAATACACTAGGCTTTGGCTAATCAGAGCATTTCATGATTCTGAATAC
ATGGACATTTACTTCTCAATAATGTCAATTCTATTTTCACTGAATTTGTT
TATTATTATTATTATTATTTTATTATTATTATTTACTATATTGAGAGGTA
TAATTTTAAATGTAGAATTATGTGTTTTTCAATCACTATTTGTTTAATTA
CCTTTCCTTATTTCGTGAAGCATATGTAGAAAATTAATTTTTTCCTCTGT
TTGCTTAAAGCTGATGCGTTATTTCAGGTTAGTAATTAATTTTCTTGCAA
AGCTTGAAATGAATTTGCCAAGCATTACTGCACTTGGGACTCAATTCTCT
TCTGCTAATTGGGGAGTAAGCTGTCTTTTCTATGCTGAGACCATCCTGAT
AATGCTCGGTATAGTATTTCTTTGCCCATTACTTGGTCACCTATATTTTT
ACACCTTTTAATAACTTTTCTTTTCCCTGCGGCTTATGCACTTTTTACCT
GTCTGACAATTACCCCCCTGTTGCCCCTGCTTCTTTATCACTATTCTTTT
TCCTTTTTTCTCCCCCTTTTTCCCCCCATATGAATCCCTCATTTACCCCC
CTCTTGTCCTCTTATTCCCCCGCCTCTTTTTTTCTCTTACCCCCCTCTTT
TAACCTGTTTTTCCCCATCCTCTCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_j14.g1 MSMg01no405_j14.g1 CHROMAT_FILE:
MSMg01no405_j14.g1 PHD_FILE: MSMg01no405_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:38 2005
         (243 letters)



>mm_chr3_12023820_12024462
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcttgagattttatcttcagtaatacactaggctttggctaatcagagcatttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcttgagattttatcttcagtaatacactaggctttggctaatcagagcatttcatg 260

                                                                       
Query: 61  attctgaatacatggacatttacttctcaataatgtcaattctattttcactgaatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctgaatacatggacatttacttctcaataatgtcaattctattttcactgaatttgt 320

                                                                       
Query: 121 ttattattattattattattttattattattatttactatattgagaggtataattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattattattattattattttattattattatttactatattgagaggtataattttaa 380

                                                                       
Query: 181 atgtagaattatgtgtttttcaatcactatttgtttaattacctttccttatttcgtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtagaattatgtgtttttcaatcactatttgtttaattacctttccttatttcgtgaa 440

              
Query: 241 gca 243
           |||
Sbjct: 441 gca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)