BAC Information

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BAC

Clone NameMSMg01-405O18
Chromosome3 (Build37)
Map Location 147,605,948 - 147,787,244
singlet/doubletdoublet
Overlap genenone
Upstream geneTtll7, Ppia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405O18.T7 (MSMg01no405_o18.b1)MSMg01-405O18.TJ (MSMg01no405_o18.g1)
ACCAG504238AG504239
length778772
length of high quality
(start - end)		249 (70 - 318)485 (75 - 559)
definitionCHROMAT_FILE: MSMg01no405_o18.b1 PHD_FILE: MSMg01no405_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:03 2005CHROMAT_FILE: MSMg01no405_o18.g1 PHD_FILE: MSMg01no405_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,605,948 - 147,606,196)(147,786,760 - 147,787,244)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGGCTTGACATCCATTCCTAATTCAACACAGCCTGAAGTCCAC
CCTGGCTTCAGAGATTCCCATGGAATTGGCTTATTATCATTTTTCCTCCT
ACCTAACCCCATCATCTTTGCTGTCATAGCCACTGTTCCTTGTAAATAAG
GCATCTGCATGTAACACTCCATTTCAGAGTCTGTTTCCAGGGAAACCTGT
TCTACTGCATCCATTATCATCAAATAATGGAAAATAATTGGCAGGATGTT
TTTACCAAATAACTTGAATATTTGTTTCTTTCTACATAAGCTCAAAGTCC
AAATTTAATCCACCAAATGCTTTGAATTCCCCCTCATCCAAAGGATTGGA
TTTATCTTATTTTATTCAATTTCTATGTGTGCAAAAGGAGAAAGAATGTA
GAAACCCGGGCATCCAGGAAACCGGACCCTATCTTGTCCTTAGAGATCAA
GTTGCATAAGGCAGGGCCAGGGACACTGGCCTTCTCTCCTTGCAAAGCTG
CTTGGCTTTGCTAATGGGGCTTGTGGTTGGAATGTGTGCCCTGCTGACAC
GGTTCCCGTTTTCTGTATCCGCTCAGAAAAGCCCTTGCTTGATACATGGT
CCCCCCCCTTTATTTGTTTTTTATATGTAATTTTCTTCCCCCCCTTTTTA
AAATCTATTTATTCTTCTGCGTCGCCTTTCTAAAAATAACTTTATCTGTT
GATTATTACTCCGTCTCTTTATCTACTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATGTGTTATTTGGAATTGCTTTGTA
AAGAGTAAAGCTAATTTAAAATACATTTTAAAAAGCATCATTCAATTGCA
CACTTAAAACTGGTAAATTTAATGTAAAACAGTCCTCAGCATAGAAAGTT
TCTCAAATGATTGATATTGTATTAAGTTTGAAATAAATTATGTTTCTCTT
ACTTATTGGTTACATATACATTTATTTGTAGATGACATGATATACCGGAT
TCATTAAATTATTTAAATCTAATAGTTATGTATATACTTATATACTTTGA
AAATTTAGTGACTGATAAAATAATGGGTTTTAAACTCTGTCTCAGCGTTT
ATGAAAGTTCAACGGTATCCTTAATAATTTTAAAATAGTTACTGAATATT
TTTATTTCCCACAAACTTTTCACAATTATTTTTTATTATACACGGCTTAC
AAGTACATATATTCCATCAAACATTCGTTTTAAATGTAAATATACTGTTC
TAGGGAAGGATTCCGTATTTCTGGTGAATGAGAAATGTGTGCTATAGAAA
GAACATTGAGAAAGCTTGTACACTATTCATGCCCTATAATTTTTATATGA
ATAGGAAACACTTTCCTCTTAAACTTCACTCTAAATATTTTATATCACAA
CATGATAATTGCTTACACAATTTTAACAATATTTCTCACTTGAATTGTTT
TTACTGTCTATTATTTTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_o18.b1 MSMg01no405_o18.b1 CHROMAT_FILE:
MSMg01no405_o18.b1 PHD_FILE: MSMg01no405_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:03 2005
         (249 letters)



>mm_chr3_147605748_147606396
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcctaattcaacacagcctgaagtccaccctggcttcagagattcccatggaattgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcctaattcaacacagcctgaagtccaccctggcttcagagattcccatggaattgg 260

                                                                       
Query: 61  cttattatcatttttcctcctacctaaccccatcatctttgctgtcatagccactgttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattatcatttttcctcctacctaaccccatcatctttgctgtcatagccactgttcc 320

                                                                       
Query: 121 ttgtaaataaggcatctgcatgtaacactccatttcagagtctgtttccagggaaacctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtaaataaggcatctgcatgtaacactccatttcagagtctgtttccagggaaacctg 380

                                                                       
Query: 181 ttctactgcatccattatcatcaaataatggaaaataattggcaggatgtttttaccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctactgcatccattatcatcaaataatggaaaataattggcaggatgtttttaccaaa 440

                    
Query: 241 taacttgaa 249
           |||||||||
Sbjct: 441 taacttgaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no405_o18.g1 MSMg01no405_o18.g1 CHROMAT_FILE:
MSMg01no405_o18.g1 PHD_FILE: MSMg01no405_o18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:03 2005
         (485 letters)



>mm_chr3_147786560_147787444
          Length = 885

 Score =  930 bits (481), Expect = 0.0
 Identities = 484/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtgttatttggaattgctttgtaaagagtaaagctaatttaaaatacattttaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 tatgtgttatttggaattgctttgtaaagagtaaagctaatttaaaatacatttaaaaaa 626

                                                                       
Query: 61  gcatcattcaattgcacacttaaaactggtaaatttaatgtaaaacagtcctcagcatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcatcattcaattgcacacttaaaactggtaaatttaatgtaaaacagtcctcagcatag 566

                                                                       
Query: 121 aaagtttctcaaatgattgatattgtattaagtttgaaataaattatgtttctcttactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagtttctcaaatgattgatattgtattaagtttgaaataaattatgtttctcttactt 506

                                                                       
Query: 181 attggttacatatacatttatttgtagatgacatgatataccggattcattaaattattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attggttacatatacatttatttgtagatgacatgatataccggattcattaaattattt 446

                                                                       
Query: 241 aaatctaatagttatgtatatacttatatactttgaaaatttagtgactgataaaataat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatctaatagttatgtatatacttatatactttgaaaatttagtgactgataaaataat 386

                                                                       
Query: 301 gggttttaaactctgtctcagcgtttatgaaagttcaacggtatccttaataattttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggttttaaactctgtctcagcgtttatgaaagttcaacggtatccttaataattttaaa 326

                                                                       
Query: 361 atagttactgaatatttttatttcccacaaacttttcacaattattttttattatacacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagttactgaatatttttatttcccacaaacttttcacaattattttttattatacacg 266

                                                                       
Query: 421 gcttacaagtacatatattccatcaaacattcgttttaaatgtaaatatactgttctagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcttacaagtacatatattccatcaaacattcgttttaaatgtaaatatactgttctagg 206

                
Query: 481 gaagg 485
           |||||
Sbjct: 205 gaagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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