BAC Information

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BAC

Clone NameMSMg01-406E05
Chromosome3 (Build37)
Map Location 127,827,716 - 127,827,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406E05.T7 (MSMg01no406_e05.b1)MSMg01-406E05.TJ (MSMg01no406_e05.g1)
ACCAG504499AG504500
length741768
length of high quality
(start - end)
242 (68 - 309)386 (76 - 461)
definitionCHROMAT_FILE: MSMg01no406_e05.b1 PHD_FILE: MSMg01no406_e05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:30 2005CHROMAT_FILE: MSMg01no406_e05.g1 PHD_FILE: MSMg01no406_e05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATAATTGCGGCGCTAAACGACTCCTATATGCAGGACTCCGCGGAATTCT
GCAGAATANACTCACCTATTGAGCCAACATAAAGGGCTGTAAGCACGGCC
TGCACTGGGTTCCTGGATTCCCAGGCTAAACACATGGCACTCTGTGGCTG
TTCCCAACGCTGTCAATCAAACACATCACTCCAAGCTTCCTTCCTGTGAT
GATGCCTTGCGTAGTAAATTCCAACAGAAATCTGTGAAGTTTTATCATTT
GGACTTTACTCATTTTGAACATTGCATAAAAGTCTAAAGCAGAAATATTT
CACGCATTTTTTTTTTTATAAAAATAAAATGGCCTTTCTCCGGNTTTATT
TCTTCCTATGTCCCCTCACCCCTCCTAGATAGAAGAGCCTACTTCTAGAG
TAATTCGTATAACTCTGTGACAAATCCACTTCAGCCTTGGTAATGCCTTT
CGTTTTGACTTCAAAACATTCACTGGCTCTCGCGGATTTGTGCTATTTAA
CACCGAGATAAAGGTAAGCTGCCTTTTTTAATAACGATGGATTACTTTTT
CTCGTTACATGCTCTTATTCAAATGGATTTTTTCAATTTAAGCACATCAA
TTCTGGAAGAAAAGGGTAACGTCAGGCTGAGAATAATTGTATTTATTATT
AGAGGAAACACCAGGAAACACAAGCCACATTAACTGAAATTATCTGATTT
AATTACTGCCAAAGTCTATAGTTTTCCTAAGAAAAGCACGC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCCTCCCCACCCCCAATGATA
CAGGGCATTGCTACTGATCCTGTCTGAGCAGCAAAACTTGATGGTAAGAC
CCTACTACAGATGACACCACACATGATCACGGGACATGTTGTATTGAGTA
GGATGGTTCCTTCTAGATAATGTTCATACTTCTAAATGGTGCTATGTAGG
TTGCTACGGGAAAACAGTCATCAAACGTCTTACTCAAGTTTGAGTGCCAT
GAGCTACAATTATGACTGCTGTGTTAAGGTATATTCCCATGGGGGTAATA
GTGGCATGTATGTTATGTGGTTAATTATCCCCTTTTTTAGTTGGAATTAA
GTCTGGCTCCACAGGAGAAAACACATACCTGATTCTAGGCAAGAACCCAT
GTTTTTGAAGGAAAGGTGTTTTCCTCAAAGGGAATGCATGGTCAGGTCAG
TGACATGTAGAGCACTCGTAGGAGATTCTGAATAGACTATTAACCCTAGG
AATAGTCGCAGATGTGAGTCACCTGATTTCACACATATGTTTCCCAAGCA
TGTCTTGGAGCAGATGTTTCTTTCCTCTGTTACGTATTTGCCGACCCATA
ACTTTTGTGCGATGCATCAAATAATCCTTTTACTGGATTCCTAGGCTCCC
GATCTCTATTACTCGTTTTCTTTCGTTCATTCAGGGGTTTACCCCCCTTT
TCTATTCCCTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_e05.b1 MSMg01no406_e05.b1 CHROMAT_FILE:
MSMg01no406_e05.b1 PHD_FILE: MSMg01no406_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:30 2005
         (242 letters)



>mm_chr3_127827516_127828158
          Length = 643

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagcc-aacataaagggctgtaagcacggcctgcactgggttcctggattcccaggc 59
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 attgagccaaacataaagggctgtaagcacggcctgcattgggttcctggattcccaggc 381

                                                                       
Query: 60  taaacacatggcactctgtggctgttcccaacgctgtcaatcaaacacatcactccaagc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaacacatggcactctgtggctgttcccaacgctgtcaatcaaacacatcactccaagc 321

                                                                       
Query: 120 ttccttcctgtgatgatgccttgcgtagtaaattccaacagaaatctgtgaagttttatc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 320 ttccttcctgtgatgatgccttgcgtagtaaattccaacagaaatctgtgaagttcaatc 261

                                                                       
Query: 180 atttggactttactcattttgaacattgcataaaagtctaaagcagaaatatttcacgca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atttggactttactcattttgaacattgcataaaagtctaaagcagaaatatttcacgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)