BAC Information

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BAC

Clone NameMSMg01-406F13
Chromosome3 (Build37)
Map Location 118,664,631 - 118,665,052
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406F13.T7 (MSMg01no406_f13.b1)MSMg01-406F13.TJ (MSMg01no406_f13.g1)
ACCAG504563AG504564
length736752
length of high quality
(start - end)
277 (327 - 603)423 (73 - 495)
definitionCHROMAT_FILE: MSMg01no406_f13.b1 PHD_FILE: MSMg01no406_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:37 2005CHROMAT_FILE: MSMg01no406_f13.g1 PHD_FILE: MSMg01no406_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATAATTTGCGGCCGCTAAACGAANNCCTATTGCAATACAATCCGNN
GGAATCCCAGAATTTCTACAATTCTGNGGNGNCATAGAATTAAACATTTG
CTAAACATAAAGCCTTCTGGGGCACTTGTGGAATGCAAATCACATTTATA
GTTCATCTTTCAACCATTTTGTTCTGAAATTTCTAAGACTATTTCATTAT
TGGAATGTCCCTGTGGTCTACTTCTGCTACTGTTTTGTTAATAAGAACTT
ATTAAATAGTTGAGGAACAATTAACATTAATTGAACATTCATGTGTATTT
TCATTATGTACTATTANATAGTGTAAAGACCAAAGTGACTTACCTCAAAT
TAGAATTAATAAATATTTTTATTGGTGATTTTACTTATTTACATTTCAAA
TGTTATCCCCCTTCCCAGTTTTTACTCCGCAATCCCCCTATCCTCTCCCT
TTCCGTGGCTTCTATGAGGGTGCTCCCCACACTCCCAACTCCTTTCTCAT
CACCCTACCATTTCCCTATGCTGGGTCATTAAGCCTTCACAGGACCAAGG
ACATCCCCTCCCTTTGGCAGATAAGGCCATCCTCTGCTACATATGCAGCT
GGAGCCATAGGTCCCTCCATGTGTAATCTTTGGTTGGTAGTTTAGTCTCT
GTGAGCTCTGGGGTCTGGATGTTTGATATTGTTAGAAATCAGTCTGGTGG
CTCCTCAGAAAATTAAAACATGGAAATAGTTTTTCC
CATGCAACGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAAAC
TCAGAAATCTCCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGAGC
ACCAACACGCCAGGCTCCGACTTTGTTATCTTAATAGCAAGTTTTATATT
TTAGTTTAGATGTATGAACCTACTGATTAGGATTATCTGTAAGTGATAAC
ACTTTAGGATACATGATTTATGGAATTAATGAATGAATAGCATATAAACA
AATGATGCTCATGGTCTAAGAAATAAATGGCTAAATAAAATGTTTGTATA
ATTATTTTTAATAGCCTATTTCAATCTTCAGATACTAATATCTTAAACCT
TTTTAGGTGTGTATTTTAGAATTTTAAGAACATATCTCCTATTGTATATT
TTTATCATATTGTTTTAAAGAAGCAGATATAATTTTATCTAATAACCTAC
AACAATAATACGAACAACAAAGATGCTGAGCAGGCTCATCAGTAAGAAGC
TCTCAGAAGTTCTTTCAGCATAGTCCAGCTCCTTTGAATAGTCCAATCAT
AGTCAGAAAGCTAAATCTACCTATCTTATGAATCTATCTATCTATGTATC
TAACTATGGATTCTACCTACCTATCAATCCATCTAATCACCCCATCCCTC
TATTTATTATTTGGGTTCATCCCCTGATAAAGGCTTTGTTCCTTTGGGTT
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_f13.g1 MSMg01no406_f13.g1 CHROMAT_FILE:
MSMg01no406_f13.g1 PHD_FILE: MSMg01no406_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:37 2005
         (423 letters)



>mm_chr3_118664337_118665158
          Length = 822

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%), Gaps = 3/424 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaaactcagaaatctccctgcctctgcctcccaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 actttgtagaccaggctggcctcgaaactcagaaatctccctgcctctgcctcccaagtg 657

                                                                       
Query: 61  ctgggattaaaggagagcaccaacacgccaggctccgactttgttatcttaatagcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctgggattaaaggagagcaccaacacgccaggctccgactttgttatcttaatagcaagt 597

                                                                       
Query: 121 tttatattttagtttagatgtatgaacctactgattaggattatctgtaagtgataacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tttatattttagtttagatgtatgaacctactgattaggattatctgtaagtgataacac 537

                                                                       
Query: 181 tttaggatacatgatttatggaattaatgaatgaatagcatataaacaaatgatgctcat 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 536 tttaggatacatgatttatggaattaatgaatgaatagcacataaacaaatgatgctcat 477

                                                                       
Query: 241 ggtctaag-aaataaatggctaaataaaatgtttgtataattatttttaatagcctattt 299
           |||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 476 ggtc-aatcaaataaatggctaaataaa-tgtttgtataattatttttaatagcctattt 419

                                                                       
Query: 300 caatcttcagatactaatatcttaaacctttttaggtgtgtattttagaattttaagaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caatcttcagatactaatatcttaaacctttttaggtgtgtattttagaattttaagaac 359

                                                                       
Query: 360 atatctcctattgtatatttttatcatattgttttaaagaagcagatataattttatcta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atatctcctattgtatatttttatcatattgttttaaagaagcagatataattttatcta 299

               
Query: 420 ataa 423
           ||||
Sbjct: 298 ataa 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)