BAC Information

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BAC

Clone NameMSMg01-406H09
Chromosome3 (Build37)
Map Location 98,976,535 - 98,976,756
singlet/doubletsinglet
Overlap geneWars2
Upstream geneLOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557
Downstream geneTbx15, M6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406H09.T7 (MSMg01no406_h09.b1)MSMg01-406H09.TJ (MSMg01no406_h09.g1)
ACCAG504651AG504652
length746786
length of high quality
(start - end)
237 (76 - 312)242 (76 - 317)
definitionCHROMAT_FILE: MSMg01no406_h09.b1 PHD_FILE: MSMg01no406_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:46 2005CHROMAT_FILE: MSMg01no406_h09.g1 PHD_FILE: MSMg01no406_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATAATTTGGGCGCTAAACGATCACACTGCATGATCATGGNGGNA
ANCTTTCTTAGCCAAACACAGAAAATCAGACATGTGTATTTGGTTTTTCA
AAAGGTAAAAAATAAAACAGTTCACTGTTTATTTTCTTTAAAAGAAACCT
ATATCTCAAAACCATTTGTGCTAGAGTGGCTATGCAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATATTTAA
AAACAAAAACAAAAAACCCAAACCTGCTAAAAATTCAAAGGAAGCAAAAG
TTATTTTAAAGAAGATCAGTAGATCATGGACATTCAAGTAATGTGTGTCC
AGAAACTCCTTTAGAAAAGTGGTATACAGTGAGTAATTCTCACCGGGGAT
ATATATATACATACACACACCACACACACACATATATACATGTACATATA
TGTGTGTATGTGTGTGTGTGTGTATGTGCGTGTACCTTTTTAATCTCATT
TTTATAATTTCCTTTTCTCTCTCCAATCTATCATTCCTATCTCATTTCTT
CCACTACTTCTCCTACTTTTTCTCCCTTACCCATCTATTTTTTTATCTCT
ACAATCTCTTCTTACTTTTATCCTTCCCAACTCCCGAGCTCTTTTTTTTT
TTTATTTTTTATCCCTCTTTTCCTCCTATTTCTTTCTCCTTCTTACTTTC
TCCCTCCTCCTTCACTCTTCACATTNCCACCCTCCCTTATTTTACA
CGATGCTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATTGCAG
AGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATTCAGAGAAATGCA
AATCAAAACAACCCTGAGATTCCATCTCACACATGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCTCTCTTATAATTGAACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATATCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTATAAAGAATGA
ATTTATGAAATTCCTAGCCTAATGGATGGACCTGGAGGTCATTCCTCCCT
GGAGTGAGGGAACATCATTCATAAAGTGAACTCCCCCAAATTGGCACTCC
ACTGATATATTGTATTATATATCCCCCATACCCTTGGATACCTCTTAATT
TTAATATACCTATCTCCCTAAATCACCCTGGAGAATCTTATTAATACATT
GCCATATTGCTGGTGTTTTCCCTACTTTTCCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_h09.b1 MSMg01no406_h09.b1 CHROMAT_FILE:
MSMg01no406_h09.b1 PHD_FILE: MSMg01no406_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:46 2005
         (237 letters)



>mm_chr3_98976335_98976976
          Length = 642

 Score =  329 bits (170), Expect = 1e-94
 Identities = 213/242 (88%), Gaps = 25/242 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagacatgtgtatttggtttttcaaaaggt-----aaaaaataaaacagttcactgttt 55
           |||||||||||||||||||||||||||||||     |||||| |||| ||||||||||||
Sbjct: 201 tcagacatgtgtatttggtttttcaaaaggtaaaaaaaaaaaaaaaatagttcactgttt 260

                                                                       
Query: 56  attttctttaaaagaaacctatatctcaaaaccatttgtgctagagtggctatgcaaata 115
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 attttctttaaaagaaacctatatctcaaaaccatttgtgctagagtgactatgcaaata 320

                                                                       
Query: 116 aataaataaataaataaataaataaataaataaataaataaataaataaataatatttaa 175
           ||||||||||||||||||||||||||||||||||   | |||                 |
Sbjct: 321 aataaataaataaataaataaataaataaataaa---acaaa-----------------a 360

                                                                       
Query: 176 aaacaaaaacaaaaaacccaaacctgctaaaaattcaaaggaagcaaaagttattttaaa 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaacaaaaacaaaaaacccaaacctgctaaaaattcaaaggaagcaaaagttattttaaa 420

             
Query: 236 ga 237
           ||
Sbjct: 421 ga 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 642
Length adjustment: 9
Effective length of query: 228
Effective length of database: 633
Effective search space:   144324
Effective search space used:   144324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)