BAC Information

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BAC

Clone NameMSMg01-407B21
Chromosome3 (Build37)
Map Location 26,823,954 - 27,020,663
singlet/doubletdoublet
Overlap geneSpata16, LOC665258, Ect2
Upstream geneNlgn1, LOC229152
Downstream geneAadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407B21.T7 (MSMg01no407_b21.b1)MSMg01-407B21.TJ (MSMg01no407_b21.g1)
ACCAG505152AG505153
length759777
length of high quality
(start - end)		607 (44 - 650)413 (73 - 485)
definitionCHROMAT_FILE: MSMg01no407_b21.b1 PHD_FILE: MSMg01no407_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:40 2005CHROMAT_FILE: MSMg01no407_b21.g1 PHD_FILE: MSMg01no407_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,823,954 - 26,824,556)(27,020,251 - 27,020,663)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAGCACTAGGATGAGAACAGCCCAAACTGATTACCTGTAATTTTCA
GATAACTAAAGGAACCCTCCCTCTTTGAGCTTTTACAGATGTAATGAAGA
AATGAGCTTCCAGTATTTATAATATTTATCTAGACTTTTTAAAAGGGTAT
TAAATAAATACTGATCTTCAAAATAAGTATAACAATCTCATGTAATAATA
ATCTCCAGTAATAATGTCATGCATACTAAAGATGAAACCAGTGAAGTAAA
CCCATTTTCCCAGGAATTTATAAATCAAAACTAGTGATAAGGCTGCCTGA
CCCATTGTGGTGGTGTGCAGAACACCCTTTAAAAGGCTGGGTTCATCCTG
CCAACCAGGCAGCATTCAACAGTGTGGTAAGTGTCTTGTTTTCAAAGGGC
ATGTTATAGCCAGTTTTAGATGGCAAAGGCTCCTCGAAGGAAAAAAAAGA
AGCAAAGAAAACGCTAATTTAGAAAGGAAAATGTTAGTCCTATCTTCTAA
AAAAGTATACTCAAGACTTACATGGAAAAAATGAAGAGGAATTCACTGAA
GAAAACCTCACACCTCTGAGGATTCCCTACCCCAGAAATGCTTCGTTTTC
NAAACGTGCACCAAGGGCTCAAAACCAACATCTTCAACACACTTTCCAAG
TGTACAATTATTTGAGTAGCTTATACTTTATAAAATGGTATCCCGTGGGA
AATTTTATA

ATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTACAAGTAAATTAGATGATGAGTTCT
GGGGAACCTTGTTTTTATGTATATTTATTCAAGATACACAAGGTGGGGTT
TTGTTTTGTTTTGTTTTTAATGAAAATGGAAGTAGGCTTTAGCAGCTAAG
ATGAAGGCAATTGAGGAACTAATTTGCTAACTTAGTACTGTGACTCCTTG
ATTTCTCTTTCCTATGTTGGTAGTGTCTCACTCACTCTATAGCCCCAAAC
TGGCCTTGATTCCTTGGCAGCCCTTCCACTCCAGCCTCCCCAAGTGCTGG
GATGACAGCATGAGCCACAGTGCCAAATTGAAGTCTTTAAAATAAGGTTT
TAGTGATAAGATGTAGTAATTCTAATTCTAAAACTCTCACCTGTGTATGT
TCAGTATTTTCTTTCCAATGGTACCCCACAGGCAAATAATGAGTTTTTTA
ACAATTACCGAATATAATGAGGGGATGCTTCTTAGGGTTTCTATTGCTGC
TATGAATTACCATTTTTCAAGCAAACTTGTGGGGGGGCCTCATTTGTTTT
AAATTTTCCAGAAAACATCTTTTCTTATTTAGGAGTTCCGTTTTGGTATC
CGAATTCATTAACTGATTCACCAGGCTCCTCTGTGGGATGTGTAAACACC
CTCCCTTTTACGTTTTTATATTTTTTCCTCACTTCAGCCTTCACATTTTC
TTTCTCTATTTTTTTCTCCTCCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_b21.b1 MSMg01no407_b21.b1 CHROMAT_FILE:
MSMg01no407_b21.b1 PHD_FILE: MSMg01no407_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:40 2005
         (607 letters)



>mm_chr3_26823750_26824756
          Length = 1007

 Score = 1104 bits (571), Expect = 0.0
 Identities = 595/603 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagcactaggatgagaacagcccaaactgattacctgtaattttcagataact 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagcacaaggatgagaacagcccaaactgattacctgtaattttcagataact 264

                                                                       
Query: 65  aaaggaaccctccctctttgagcttttacagatgtaatgaagaaatgagcttccagtatt 124
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aaaggagccctccctctttgagcttttacagatgtaacgaagaaatgagcttccagtatt 324

                                                                       
Query: 125 tataatatttatctagactttttaaaagggtattaaataaatactgatcttcaaaataag 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 325 tataatatttatctagacttttttaaagggtattaaataaatactgatcttcagaataag 384

                                                                       
Query: 185 tataacaatctcatgtaataataatctccagtaataatgtcatgcatactaaagatgaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataacaatctcatgtaataataatctccagtaataatgtcatgcatactaaagatgaaa 444

                                                                       
Query: 245 ccagtgaagtaaacccattttcccaggaatttataaatcaaaactagtgataaggctgcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagtgaagtaaacccattttcccaggaatttataaatcaaaactagtgataaggctgcc 504

                                                                       
Query: 305 tgacccattgtggtggtgtgcagaacaccctttaaaaggctgggttcatcctgccaacca 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 tgacccattgtggtggtgtgcagaacaccctttataaggctgggttcatcctgccaacca 564

                                                                       
Query: 365 ggcagcattcaacagtgtggtaagtgtcttgttttcaaagggcatgttatagccagtttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggcagcattcaacagtgtggtaagtgtcttgttttcaaagggcatgttatagccagtttt 624

                                                                       
Query: 425 agatggcaaaggctcctcgaaggaaaaaaaagaagcaaagaaaacgctaatttagaaagg 484
           |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 625 agatggcaaaggctcctcgaaggaaaaaaatgaagcaaagaaaacgctaattcagaaagg 684

                                                                       
Query: 485 aaaatgttagtcctatcttctaaaaaagtatactcaagacttacatggaaaaaatgaaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaatgttagtcctatcttctaaaaaagtatactcaagacttacatggaaaaaatgaaga 744

                                                                       
Query: 545 ggaattcactgaagaaaacctcacacctctgaggattccctaccccagaaatgcttcgtt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggaattcactgaagaaaacctcacacctctgaggattccctaccccagaaatgcttcgtt 804

              
Query: 605 ttc 607
           |||
Sbjct: 805 ttc 807


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_b21.g1 MSMg01no407_b21.g1 CHROMAT_FILE:
MSMg01no407_b21.g1 PHD_FILE: MSMg01no407_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:40 2005
         (413 letters)



>mm_chr3_27020162_27020974
          Length = 813

 Score =  791 bits (409), Expect = 0.0
 Identities = 412/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacaagtaaattagatgatgagttctggggaaccttgtttttatgtatatttattcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cttacaagtaaattagatgatgagttctggggaaccttgtttttatgtatatttattcaa 443

                                                                       
Query: 61  gatacacaaggtggggttttgttttgttttgtttttaatgaaaatggaagtaggctttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gatacacaaggtggggttttgttttgttttgtttttaatgaaaatggaagtaggctttag 383

                                                                       
Query: 121 cagctaagatgaaggcaattgaggaactaatttgctaacttagtactgtgactccttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagctaagatgaaggcaattgaggaactaatttgctaacttagtactgtgactccttgat 323

                                                                       
Query: 181 ttctctttcctatgttggtagtgtctcactcactctatagccccaaactggccttgattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctctttcctatgttggtagtgtctcactcactctatagccccaaactggccttgattc 263

                                                                       
Query: 241 cttggcagcccttccactccagcctccccaagtgctgggatgacagcatgagccacagtg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgggcagcccttccactccagcctccccaagtgctgggatgacagcatgagccacagtg 203

                                                                       
Query: 301 ccaaattgaagtctttaaaataaggttttagtgataagatgtagtaattctaattctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccaaattgaagtctttaaaataaggttttagtgataagatgtagtaattctaattctaaa 143

                                                                
Query: 361 actctcacctgtgtatgttcagtattttctttccaatggtaccccacaggcaa 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 actctcacctgtgtatgttcagtattttctttccaatggtaccccacaggcaa 90


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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