BAC Information

Click to search

BAC

Clone NameMSMg01-407D21
Chromosome3 (Build37)
Map Location 127,061,143 - 127,254,958
singlet/doubletdoublet
Overlap geneLOC100043361, LOC100043364, Larp7
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream gene4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407D21.T7 (MSMg01no407_d21.b1)MSMg01-407D21.TJ (MSMg01no407_d21.g1)
ACCAG505247AG505248
length753753
length of high quality
(start - end)
491 (46 - 536)451 (74 - 524)
definitionCHROMAT_FILE: MSMg01no407_d21.b1 PHD_FILE: MSMg01no407_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005CHROMAT_FILE: MSMg01no407_d21.g1 PHD_FILE: MSMg01no407_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,254,468 - 127,254,958)(127,061,143 - 127,061,593)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGGACTGCCCAGGCAGTGGTGACGCACACCTTTAATCCCAGCA
TTTGGGAGTTGGCAAAGGCAGGTGGATTTCTGAGTTCGAGACCAGCCCGA
TCTACAGAGTAAATTCCAGAACAGCCAGGCTATACAGAGAAACCCTGTCT
TGAAACCACCACCCACCACCCCCCAAAAAAGAAATTCCTGGGTCAGAATA
TAGTGTGAATGGTGACAAAGTGTAGCTTCTACTAAACGGTAGACAGTGTA
AGAGTCAAACACCTCGGTTTGCTTACCTACCTAGTTTTGACTGAATTACA
TAACCTTTCAGCCTCCCTTTGAAAAGGGGAAAGAAACGACCAAGTAGGAT
TGTCAAGATTTAAAACTATATAAATATCTGGCATTGCTTCACAGTAATTT
CTTTGTTCCAAGACTGTGAGTTTTGTGGGTGGATGTTGTTTGTTTGTTTG
TTTGATTGATTGATTGCTTGGAGGCAGGATTTTTTATGCAGCTCTGGCTG
CCCTGAATTTCTGCTTAGTAGGCCAGCCTCATATTCCGAGAACCCCCTGG
CCCCACCTCCCAAGTACTGGTATTAAATGTGTTTATCTCCACCTCCCTTT
TTCATGTTTTTTTATGATCCGTGCTTCACTTTTTTTATGACTTACCTCTC
GCATTCTTTTATCGCCTCCCGATCTCACAATTTCCCTTTCCACCCCTTAC
CAN
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAAGCAAGATGATCTCTAGGGCTTGC
TAGTTCTCATCTTAGCTGAGAAAACTCCTAGGTTCAGGGAGTTCTGGGTT
TGAACTTGACCATCTAATATACTGGACCTGGTAGCACTGATTAGAAATCT
CAGCCCTGGGGATGTGGAGGAGGAGAAAGAGAACGAGAAATTTAAGGTCA
TTCTTGGGTAAATGATGAGGTTGAGACTGGTCTGGAATACTTAAGAACAC
AAAGCAGAAAGAGCCTGCAGAAATAGGGTCATTATTACAGTTTACTGAAC
TTGAATAATGATATTGCAATTCTCTGTAACAATATGGCAAGAGTCTCTTG
CTAGTTTAGTGTCACATACACGCAAAATGACAAAATCAGAAAGCAAAGCA
CAAGAATTACTGACCTCCAACCTTGTGCACTTTCCACCATACCATGGTCA
TGCCTTTCTCTGAGCTCCGTGATAGCCTATTCCACGTGCTCTAGTTTACT
ACTTTCAAGAATATTCTTCCTTGAAACCTCATTCTTTCCTTCCCTGAGCA
CTCATTATGTGGTAGGAATTTTAAAAAAACTACAGAAGTAGAGAAAAAGA
ATTACTTTTCTGTTTGGGACAGGGGACTCCCGGGATTTATAAATGTGGAA
GGAACCCCCCCGAATTTTTATTTCTGTGGATTTTCGTTTTTTGACTACCT
CAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_d21.b1 MSMg01no407_d21.b1 CHROMAT_FILE:
MSMg01no407_d21.b1 PHD_FILE: MSMg01no407_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
         (491 letters)



>mm_chr3_127254229_127255119
          Length = 891

 Score =  868 bits (449), Expect = 0.0
 Identities = 479/495 (96%), Gaps = 12/495 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgggactgcccaggcagtggtgacgcacacctttaatcccagcatttgggagt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcctgggacagcccaggcagtggtgacgcacacctttaatcccagcatttgggagt 671

                                                                       
Query: 65  tggcaaaggcaggtggatttctgagttcgagaccagcccgatctacagagtaaattccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tggcaaaggcaggtggatttctgagttcgagaccagcccgatctacagagtaaattccag 611

                                                                       
Query: 125 aacagccaggctatacagagaaaccctgtcttgaaaccaccacccaccaccccccaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aacagccaggctatacagagaaaccctgtcttgaaaccaccacccaccaccccccaaaaa 551

                                                                       
Query: 185 agaaattcctgggtcagaatatagtgtgaatggtgacaaagtgtagcttctactaaacgg 244
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 550 agaaattcctgggtcagaatatagtgtgaatgctgacagagtgtagcttctactaaacgg 491

                                                                       
Query: 245 tagacagtgtaagagtcaaacacctcggtttgcttacctacctagttttgactgaattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagacagtgtaagagtcaaacacctcggtttgcttacctacctagttttgactgaattac 431

                                                                       
Query: 305 ataacctttcagcctccctttgaaaaggggaaagaaacgaccaagtaggattgtcaagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ataacctttcagcctccctttgaaaaggggaaagaaacgaccaagtaggattgtcaagat 371

                                                                       
Query: 365 ttaaaa--------ctatataaatatctggcattgcttcacagtaatttctttgttccaa 416
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttaaaactatctatctatataaatatctggcattgcttcacagtaatttctttgttccaa 311

                                                                       
Query: 417 gactgtgagttttgtgggtggatgttgtttgtttgtttgtttgattgattgattgcttgg 476
           |||||||||||||||||||||||||||||||||||||||||||  |  ||||||| ||||
Sbjct: 310 gactgtgagttttgtgggtggatgttgtttgtttgtttgtttg--t--ttgattgtttgg 255

                          
Query: 477 aggcaggatttttta 491
           |||||||||||||||
Sbjct: 254 aggcaggatttttta 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no407_d21.g1 MSMg01no407_d21.g1 CHROMAT_FILE:
MSMg01no407_d21.g1 PHD_FILE: MSMg01no407_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
         (451 letters)



>mm_chr3_127060943_127061793
          Length = 851

 Score =  864 bits (447), Expect = 0.0
 Identities = 450/451 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagcaagatgatctctagggcttgctagttctcatcttagctgagaaaactcctaggt 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaacaagatgatctctagggcttgctagttctcatcttagctgagaaaactcctaggt 260

                                                                       
Query: 61  tcagggagttctgggtttgaacttgaccatctaatatactggacctggtagcactgatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagggagttctgggtttgaacttgaccatctaatatactggacctggtagcactgatta 320

                                                                       
Query: 121 gaaatctcagccctggggatgtggaggaggagaaagagaacgagaaatttaaggtcattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatctcagccctggggatgtggaggaggagaaagagaacgagaaatttaaggtcattc 380

                                                                       
Query: 181 ttgggtaaatgatgaggttgagactggtctggaatacttaagaacacaaagcagaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggtaaatgatgaggttgagactggtctggaatacttaagaacacaaagcagaaagag 440

                                                                       
Query: 241 cctgcagaaatagggtcattattacagtttactgaacttgaataatgatattgcaattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcagaaatagggtcattattacagtttactgaacttgaataatgatattgcaattct 500

                                                                       
Query: 301 ctgtaacaatatggcaagagtctcttgctagtttagtgtcacatacacgcaaaatgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtaacaatatggcaagagtctcttgctagtttagtgtcacatacacgcaaaatgacaa 560

                                                                       
Query: 361 aatcagaaagcaaagcacaagaattactgacctccaaccttgtgcactttccaccatacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcagaaagcaaagcacaagaattactgacctccaaccttgtgcactttccaccatacc 620

                                          
Query: 421 atggtcatgcctttctctgagctccgtgata 451
           |||||||||||||||||||||||||||||||
Sbjct: 621 atggtcatgcctttctctgagctccgtgata 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)