Query= MSMg01no407_d21.b1 MSMg01no407_d21.b1 CHROMAT_FILE:
MSMg01no407_d21.b1 PHD_FILE: MSMg01no407_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
(491 letters)
>mm_chr3_127254229_127255119
Length = 891
Score = 868 bits (449), Expect = 0.0
Identities = 479/495 (96%), Gaps = 12/495 (2%)
Strand = Plus / Minus
Query: 5 gaattcctgggactgcccaggcagtggtgacgcacacctttaatcccagcatttgggagt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaattcctgggacagcccaggcagtggtgacgcacacctttaatcccagcatttgggagt 671
Query: 65 tggcaaaggcaggtggatttctgagttcgagaccagcccgatctacagagtaaattccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tggcaaaggcaggtggatttctgagttcgagaccagcccgatctacagagtaaattccag 611
Query: 125 aacagccaggctatacagagaaaccctgtcttgaaaccaccacccaccaccccccaaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aacagccaggctatacagagaaaccctgtcttgaaaccaccacccaccaccccccaaaaa 551
Query: 185 agaaattcctgggtcagaatatagtgtgaatggtgacaaagtgtagcttctactaaacgg 244
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 550 agaaattcctgggtcagaatatagtgtgaatgctgacagagtgtagcttctactaaacgg 491
Query: 245 tagacagtgtaagagtcaaacacctcggtttgcttacctacctagttttgactgaattac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagacagtgtaagagtcaaacacctcggtttgcttacctacctagttttgactgaattac 431
Query: 305 ataacctttcagcctccctttgaaaaggggaaagaaacgaccaagtaggattgtcaagat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ataacctttcagcctccctttgaaaaggggaaagaaacgaccaagtaggattgtcaagat 371
Query: 365 ttaaaa--------ctatataaatatctggcattgcttcacagtaatttctttgttccaa 416
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttaaaactatctatctatataaatatctggcattgcttcacagtaatttctttgttccaa 311
Query: 417 gactgtgagttttgtgggtggatgttgtttgtttgtttgtttgattgattgattgcttgg 476
||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct: 310 gactgtgagttttgtgggtggatgttgtttgtttgtttgtttg--t--ttgattgtttgg 255
Query: 477 aggcaggatttttta 491
|||||||||||||||
Sbjct: 254 aggcaggatttttta 240
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_d21.g1 MSMg01no407_d21.g1 CHROMAT_FILE:
MSMg01no407_d21.g1 PHD_FILE: MSMg01no407_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:50 2005
(451 letters)
>mm_chr3_127060943_127061793
Length = 851
Score = 864 bits (447), Expect = 0.0
Identities = 450/451 (99%)
Strand = Plus / Plus
Query: 1 ataagcaagatgatctctagggcttgctagttctcatcttagctgagaaaactcctaggt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaacaagatgatctctagggcttgctagttctcatcttagctgagaaaactcctaggt 260
Query: 61 tcagggagttctgggtttgaacttgaccatctaatatactggacctggtagcactgatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagggagttctgggtttgaacttgaccatctaatatactggacctggtagcactgatta 320
Query: 121 gaaatctcagccctggggatgtggaggaggagaaagagaacgagaaatttaaggtcattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatctcagccctggggatgtggaggaggagaaagagaacgagaaatttaaggtcattc 380
Query: 181 ttgggtaaatgatgaggttgagactggtctggaatacttaagaacacaaagcagaaagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggtaaatgatgaggttgagactggtctggaatacttaagaacacaaagcagaaagag 440
Query: 241 cctgcagaaatagggtcattattacagtttactgaacttgaataatgatattgcaattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgcagaaatagggtcattattacagtttactgaacttgaataatgatattgcaattct 500
Query: 301 ctgtaacaatatggcaagagtctcttgctagtttagtgtcacatacacgcaaaatgacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtaacaatatggcaagagtctcttgctagtttagtgtcacatacacgcaaaatgacaa 560
Query: 361 aatcagaaagcaaagcacaagaattactgacctccaaccttgtgcactttccaccatacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcagaaagcaaagcacaagaattactgacctccaaccttgtgcactttccaccatacc 620
Query: 421 atggtcatgcctttctctgagctccgtgata 451
|||||||||||||||||||||||||||||||
Sbjct: 621 atggtcatgcctttctctgagctccgtgata 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|