Query= MSMg01no407_f24.b1 MSMg01no407_f24.b1 CHROMAT_FILE:
MSMg01no407_f24.b1 PHD_FILE: MSMg01no407_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:00 2005
(529 letters)
>mm_chr3_58139070_58140002
Length = 933
Score = 847 bits (438), Expect = 0.0
Identities = 450/456 (98%), Gaps = 4/456 (0%)
Strand = Plus / Minus
Query: 78 tgtcagaaaaatatgtaccacggtttcattagaaaatctgcaacaaaagtttgtactttc 137
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tgtcagaaaaatatgtatcatggtttcattagaaaatctgcaacaaaagtttgtactttc 874
Query: 138 taattctactaggaaaaaaaaaatccaagctgctattatcttgcaacaggacagctgtaa 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 taattctactaggaaaaaaaaaatccaagctgctattatcttgcaacaggacagctgtaa 814
Query: 198 atgaggcggcaccgtgttgggtttgaggacatccctccgtctctccctgtctctctccct 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 atgaggcggcaccgtgttgggtttgaggacatccctccgtctctccctgtctctctccct 754
Query: 258 tctttcttcgttccatccttaaatataatacaaaacagaactagatctgagagaggtctt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tctttcttcgttccatccttaaatataatacaaaacagaactagatctgagagaggtctt 694
Query: 318 gct----cccccccccagcagaattacaccaagcacaaagcaatgcattttccaaatacc 373
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gctcccccccccccccagcagaattacaccaagcacaaagcaatgcattttccaaatacc 634
Query: 374 gtatgaagtcctgtcaattaatttctttcttttactttgaacccttaaagagatagaatt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gtatgaagtcctgtcaattaatttctttcttttactttgaacccttaaagagatagaatt 574
Query: 434 acttgcatcagttcctacagaatggcagccaaggcttttattaaaaacacggcccttcac 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acttgcatcagttcctacagaatggcagccaaggcttttattaaaaacacggcccttcac 514
Query: 494 atttgcccatattttccttccttctaaaatgggaga 529
||||||||||||||||||||||||||||||||||||
Sbjct: 513 atttgcccatattttccttccttctaaaatgggaga 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 933
Length adjustment: 10
Effective length of query: 519
Effective length of database: 923
Effective search space: 479037
Effective search space used: 479037
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_f24.g1 MSMg01no407_f24.g1 CHROMAT_FILE:
MSMg01no407_f24.g1 PHD_FILE: MSMg01no407_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:00 2005
(428 letters)
>mm_chr3_57934214_57935041
Length = 828
Score = 820 bits (424), Expect = 0.0
Identities = 427/428 (99%)
Strand = Plus / Plus
Query: 1 tcttggggacaaaatatccaaaggagactaggtgctgatgtgcagctgtctgatttgtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggggacaaaatatccaaaggagactaggtgctgatgtgcagctgtctgatttgtta 260
Query: 61 agaccatctgaagtgaagctgaagtggcacatttatttgctgaaacaagctacagcactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaccatctgaagtgaagctgaagtggcacatttatttgctgaaacaagctacagcactc 320
Query: 121 agaagtgggaaatcctattaagatcatgaaaaccctactctagagccattccctctagaa 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agaagtgggaaatcctattaagatcatgaaaaccctactctagaaccattccctctagaa 380
Query: 181 cagtagttttcaaccttcctaatgctgtgactgaccctttaatacagctcctttcgttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtagttttcaaccttcctaatgctgtgactgaccctttaatacagctcctttcgttgt 440
Query: 241 tgtgatgaaggaagataaaatattgtaacttgtgagtttaagagcccacgggcccggcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgatgaaggaagataaaatattgtaacttgtgagtttaagagcccacgggcccggcct 500
Query: 301 gggactgagaacaaagcagaacagcccccaatcatgccagggcagggctgttgttaaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggactgagaacaaagcagaacagcccccaatcatgccagggcagggctgttgttaaggc 560
Query: 361 attcctaagaacatcttgactgtaaagatgaaaaggtatgcaaggaccagcagggctata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcctaagaacatcttgactgtaaagatgaaaaggtatgcaaggaccagcagggctata 620
Query: 421 ttatctga 428
||||||||
Sbjct: 621 ttatctga 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
