BAC Information

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BAC

Clone NameMSMg01-407G05
Chromosome3 (Build37)
Map Location 98,700,931 - 98,701,195
singlet/doubletsinglet
Overlap genenone
Upstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
Downstream geneLOC668557, Wars2, Tbx15, M6pr-ps, Spag17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407G05.T7 (MSMg01no407_g05.b1)MSMg01-407G05.TJ (MSMg01no407_g05.g1)
ACCAG505359AG505360
length749750
length of high quality
(start - end)
269 (44 - 312)463 (76 - 538)
definitionCHROMAT_FILE: MSMg01no407_g05.b1 PHD_FILE: MSMg01no407_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:01 2005CHROMAT_FILE: MSMg01no407_g05.g1 PHD_FILE: MSMg01no407_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCAGTTGCCGAACACTTTTCACTCCATAAAATAAGGACAAATGGTG
TAATCTATTTGTCTTGTACCCAAGATCCCCAAAAGTCCCTCTTTAGGCTT
TTTCCCCATATGTCTTTGTAACTATGCCATGGCTTTGGCCCTACTAATAA
CATAGCCACTGCTGGAGGTTCATAGCTTATAATGGGATCAGAAATATGCA
AACTTCTCTTAATGTGACTTAGCCCTATCAGTGAATGATTTCAGTAACTG
AAGGGTGATACTACTTTCTTATATCAAGGGTCATTTTCAGCCTAATAGTC
TTAAGTCAAGCATAACTGAGTCTAAGGTTCATCCTGACTTGCAGGGTCAT
CTCAAGTGAGATATAACATATAACCAGAGGAGAAGAATTCTATTGCTCAG
GACTCTGGCATTTGATGGAGGCCAACTGCCACCTGCTTTCTGGTTGGATG
ATGACTACTTAGGATGGCCTCTCATTCCTATCACCCAAATTAAGTAGGCA
CATTCCTCATCAGGTAATAATGGCCACCCCAGAAAGATAAGTTATACCCT
CCTATTGCCTCTCTTGCTTTCTTTATAACCCCCTTGGTGATGTTCCAGTA
ATACCCTAGATGATTCTCCTTAACTGGCCTTATCCCTCCCACTGAATTAT
TTTCCCCTACACTGTAGCACAAGCTGTTCCAATTTTCCTTCCTCTACCG
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAATACTTTTATCAT
GAATGGGTGTTGGAATTTTTCAAATGCTTCCTCCGCATCTAATGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATGTACTGGAATTATGTTGAT
GGATTTCCGTATACTCAACCATCCCTGCATCCCTGGGATGAAACCTACTT
GGTCAGAATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGCAAGA
ACTTTATTGAGGATTTTTGCTTCGATATTCATAAGGGATATTGGTCTGAA
GTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTAACTG
TGGCTTCATAGAATGAGTTGGGTAGAGTACCTGCTGTTTCTATTTTGTGG
AATAGTTTGTGAAGAACTGGGATTAGATGTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCATCTGGTCCTGGGATTTTTTTGGTTGGGAGACTAT
TAATGACTGCTTCTATTTCTTTGTGGGATATAGGGCTGTTTATATCATTA
CCCTGATCTTGCTTCCTCTTTTGTACCTTGTAATCTGTCTACATACTCCC
CCATTTCTTCCTTTGCTCTCCAGATTTTGATTATTATATGCTTTCGGTCT
GATTGATCTGAGTGGTCTTTTCTCATTTTTCCACCTTTTTTCTGTATCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_g05.b1 MSMg01no407_g05.b1 CHROMAT_FILE:
MSMg01no407_g05.b1 PHD_FILE: MSMg01no407_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:01 2005
         (269 letters)



>mm_chr3_98700727_98701395
          Length = 669

 Score =  482 bits (249), Expect = e-140
 Identities = 261/265 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcagttgccgaacacttttcactccataaaataaggacaaatggtgtaatcta 64
           ||||||||||| ||  |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 469 gaattcagcagctggtgaacacttttcactccataaaataaggacagatggtgtaatcta 410

                                                                       
Query: 65  tttgtcttgtacccaagatccccaaaagtccctctttaggctttttccccatatgtcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttgtcttgtacccaagatccccaaaagtccctctttaggctttttccccatatgtcttt 350

                                                                       
Query: 125 gtaactatgccatggctttggccctactaataacatagccactgctggaggttcatagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtaactatgccatggctttggccctactaataacatagccactgctggaggttcatagct 290

                                                                       
Query: 185 tataatgggatcagaaatatgcaaacttctcttaatgtgacttagccctatcagtgaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tataatgggatcagaaatatgcaaacttctcttaatgtgacttagccctatcagtgaatg 230

                                    
Query: 245 atttcagtaactgaagggtgatact 269
           |||||||||||||||||||||||||
Sbjct: 229 atttcagtaactgaagggtgatact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)