BAC Information

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BAC

Clone NameMSMg01-407H24
Chromosome3 (Build37)
Map Location 92,281,259 - 92,281,618
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575
Downstream geneSprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407H24.T7 (MSMg01no407_h24.b1)MSMg01-407H24.TJ (MSMg01no407_h24.g1)
ACCAG505444AG505445
length773771
length of high quality
(start - end)
496 (42 - 537)427 (71 - 497)
definitionCHROMAT_FILE: MSMg01no407_h24.b1 PHD_FILE: MSMg01no407_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:09 2005CHROMAT_FILE: MSMg01no407_h24.g1 PHD_FILE: MSMg01no407_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCAACATTAATTTCCAGAGCAGCTGCACCACCAACAGTGAATTAGGGTT
CCTTTTCCACATCTCCTCCAGCATCTATTGTTGTTTGTTTGCTTTTTGTA
ATTCTGTCTGGAATAAGTAAAGATCCCAAAATTGTTTTGAGTTTCATTTT
CTTCATTGCTATGAGCAATGAACTTTATTTTTCCGATGTTTCATAGCTAT
TTTTTTTCTTCCTTTGAGAATTCCTGGTTCAGATCACACAGATATTGTTT
TTGTACTCTTTGCTTTTGAGTTCTATATATATTCTGGATATTAATCCTAT
GTCAGATGTATATAGATGACAAGGATTCTATCCAAACCTGTGGGCTTCCT
CCTCACCTGGTTGACTGTTTCTGTAGCTGTGCAGAAGCTTTTTAGTTGTT
GACCTTAGTTTGGGAGAAATGAACTCTGATTCAGAAAGGCCTTTCCTACA
CCTGCATCCTGTGAAGCACTTCTTATGTAATCTTCCAGAGGTTACAGGGG
TTTCAGCTTTCAGCATTTAAGTCTGTGATCCAGTCAGAGTTAGTTTTCTG
TGAAGTGACAAAATGTGATGGAGTTTTCCTCATCTACATGTGGAAATAAC
CAGCTTTCCAAGCACCTTAAGTTTAAAAATGCTAATTTTCCTCCCGCGGT
TTTTAACTTATGAAAATTTTATTCCCTAAAAATGTTACCTAATTTCCCCC
ACAGGGTGAAAGTCTTACGACTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCAGTTTTGTATTTAAACTTAGCTTACAA
AGTTGTAGGTTTCCTTATGACATTTCCACACACTTTTAGTTGTGGCAGAT
CACTCTCCCCTTACCTATTTTTTCTGCAAAAGCAGCATGTGCTAATATCT
CCTAAGTGATACCCAAAAATACCTGTTGGCATCCTTTCAGCCCAAAGTAC
TGTCTGTCCCTTATGATAAGGTGACTTTCTCGGAGGAAACACATAGATGG
CTCTTACATTTTAATCAATTCTTATTTTTATTTTTTGATTGGAAAATTTA
GACTATTAATAATAAGTTACTACTGAAAAGTATGTACCAATTCCTGCCAT
TTTGTTGGTGTTCCAGTATTTGGGGTCTTCTTATCGCACTGTTGCTTGAC
TAGTTGTATAATAGATACAACTGTGATTTATTTTATTCTATGACTTCATG
TGTGCCATTTTTCTACTTCACTCTGAAAGATTGCTTCCATTATCTACTGT
AGAGCTGACTATTTCCTTTTGTCTGCCTACTTAGTTGTTAATTTATATAT
TATGAGGGAAGGTATATTGGACCTTGCCGGGAGGAGGTCTAATAGCCCCC
TGTAACTGGATGGTGCTTTTCCCCAAATATTAGGATATTCCTATAGGTTT
TGCTGAGAATTTTTCCTGCTTTTTAAAAGAAAATTTTCTCCCCTAATACC
AAGCCTGTAGATTTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_h24.g1 MSMg01no407_h24.g1 CHROMAT_FILE:
MSMg01no407_h24.g1 PHD_FILE: MSMg01no407_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:09 2005
         (427 letters)



>mm_chr3_92281259_92282086
          Length = 828

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%), Gaps = 1/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagttttgtatttaaacttagcttacaaagttgtaggtttccttatgacatttccaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttcagttttgtatttaaacttagcttacaaagttgtaggtttccttatgacatttccaca 301

                                                                       
Query: 61  cacttttagttgtggcagatcactctccccttaccta-ttttttctgcaaaagcagcatg 119
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 cacttttaattgtggcagatcactctccccttacctatttttttctgcaaaagcagcatg 241

                                                                       
Query: 120 tgctaatatctcctaagtgatacccaaaaatacctgttggcatcctttcagcccaaagta 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgctgatatctcctaagtgatacccaaaaatacctgttggcatcctttcagcccaaagta 181

                                                                       
Query: 180 ctgtctgtcccttatgataaggtgactttctcggaggaaacacatagatggctcttacat 239
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 180 ctgtctgtcccttatgataaggtgactttctcggaggaaacacataaatggctcttacat 121

                                                                       
Query: 240 tttaatcaattcttatttttattttttgattggaaaatttagactattaataataagtta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tttaatcaattcttatttttattttttgattggaaaatttagactattaataataagtta 61

                                                                       
Query: 300 ctactgaaaagtatgtaccaattcctgccattttgttggtgttccagtatttggggtctt 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 60  ctactgaaaagtatgtaccaattcctgccattttgttggtgttacagtatttggggtctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)