BAC Information

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BAC

Clone NameMSMg01-407I11
Chromosome3 (Build37)
Map Location 98,700,951 - 98,701,163
singlet/doubletsinglet
Overlap genenone
Upstream geneSec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3
Downstream geneLOC668557, Wars2, Tbx15, M6pr-ps, Spag17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407I11.T7 (MSMg01no407_i11.b1)MSMg01-407I11.TJ (MSMg01no407_i11.g1)
ACCAG505466AG505467
length751728
length of high quality
(start - end)
213 (82 - 294)333 (81 - 413)
definitionCHROMAT_FILE: MSMg01no407_i11.b1 PHD_FILE: MSMg01no407_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:11 2005CHROMAT_FILE: MSMg01no407_i11.g1 PHD_FILE: MSMg01no407_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGTACGGATCCGCG
GAATTCAGCAGTAGCAGAAACTTTTCACTCCATAAAATAAGGACAAATGG
TGTAATCTATTTGTCTTGTACCCAAGATCCCCAAAAGTCCCTCTTTAGGC
TTTTTCCCCATATGTCTTTGTAACTATGCCATGGCTTTGGCCCTACTAAT
AACATAGCCACTGCTGGAGGTTCATAGCTTATAATGGGATCAGATATATG
CAAACTTCTCTTAATGTGACTTAGCCCTATCAGTGAATGATTTCAGTACC
TGAAGGGTGATACTTTTTTCTAATATCAAGGGTCATTTTCAGCCTAATAG
TCTTAAGTCTAGCATAACTGAGTCTAAGGCTCATCCTGACTTGCAGGGCC
ATCTCAAGCGATTAATAATTTATAACCCTATTTAGAATAACCCAATTGCC
CCTGTATCTTGCTTCTGATGGAAGTCCTTTGTCCTCTGCTTTTTGTCCGC
ATTGATGACCACCCAGTACGCTCTCTCATTCCTATCATCTCAAATAAGTA
TGCAAATTCCTTCACAGGTAATTAACGTTCACTCTTTTAATAATATTTTC
CCCTTTCCCGTTTGCTTCTCCATCACTTCTTTTTCATCCTCTTTGCTTTT
TGCTTTTTTCCCTTTTTCATTATTCACCTCCCACAATTGGTTCTTCTCCC
TCCTTAGCTATTCCAACCCCCCTTTTTAATATTCCACATTACGCACCCGC
G
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCATACTTTTA
TCATGAATGGGTGTTGGAATTTTTCAAATGCTTCCTCCGCATCTAATGAG
ATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATGTACTGGAATTATGT
TGATGGATTTCCGTATACTCAACCATCCCTGCATCCCTGGGATGAAACCT
ACTTGGTCAGAATGGATGATTGTTTTGATGTGTTCTTGGATTCGGTTAGC
AAGAACTTTATTGAGGATTTTTGCATCGATATTCATAAGGGATATTGGTC
TGAAGTTCTCTATCTTTGTTGGGTCTTTTTGTGGTTTAGGTATCAGAGTA
ACTGTGGCTTCATAGAATGAGTTGGGTAGAGAACCTGCTGTTTCTATTTT
GTGGAATATTTTGTGAAGAACTGGGATTACATGTTCTTTTGAAGGTCTGA
TAGAACTCTGCACTAAACCCATTTGGTCCTGGAATTTTTTTGGTTGGGAG
ACTATTAATGACTGCCTCTACTTCTTTGGAGGATATAGGTCTGTTTACAC
CTTTAATCTGATCTTGAATTCCACTTTGCCACCTGGTATCTTGTCTAGAA
ACTTCTCCATTTCCTCTAGGTTCTCCCGTTTTTTTTCAGCATAAACTTTT
TGAATATAGATCTTATTGCTGTATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_i11.b1 MSMg01no407_i11.b1 CHROMAT_FILE:
MSMg01no407_i11.b1 PHD_FILE: MSMg01no407_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:11 2005
         (213 letters)



>mm_chr3_98700751_98701363
          Length = 613

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaataaggacaaatggtgtaatctatttgtcttgtacccaagatccccaaaagtccc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ataaaataaggacagatggtgtaatctatttgtcttgtacccaagatccccaaaagtccc 354

                                                                       
Query: 61  tctttaggctttttccccatatgtctttgtaactatgccatggctttggccctactaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctttaggctttttccccatatgtctttgtaactatgccatggctttggccctactaata 294

                                                                       
Query: 121 acatagccactgctggaggttcatagcttataatgggatcagatatatgcaaacttctct 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 293 acatagccactgctggaggttcatagcttataatgggatcagaaatatgcaaacttctct 234

                                            
Query: 181 taatgtgacttagccctatcagtgaatgatttc 213
           |||||||||||||||||||||||||||||||||
Sbjct: 233 taatgtgacttagccctatcagtgaatgatttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)